myRT

myRT report for GCA_900114865.1_IMG-taxon_2654588180_annotated_assembly

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Seq: FOUM01000038.1 (60683 bp)
Overview 1 RT 1: 56252-60182 bp Neighborhood of RT #1 [56252, 60562] Bac_Flav_CT_G RVT_N RVT-GII GIIM Feature: gene Location: 56252-58282 bp Feature: domain Description: Bac_Flav_CT_G Location: 56255-58277 bp Feature: domain Description: Bac_Flav_CT_G Location: 56255-58277 bp Feature: gene Location: 58476-58682 bp Feature: gene Location: 58880-60562 bp Feature: domain Description: RVT_N Location: 58961-59204 bp Feature: domain Description: RVT_N Location: 58961 -59204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59249-59897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59249-59897 bp Feature: domain Description: GIIM Note: maturase Location: 59948-60182 bp Feature: domain Description: GIIM Note: maturase Location: 59948-601 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: FOUM01000009.1 (185180 bp)
Overview 1 RT 1: 472-12867 bp Neighborhood of RT #1 [472, 12998] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 472-1296 bp Feature: domain Description: PDDEXK_2 Location: 493-1171 bp Feature: domain Description: PDDEXK_2 Location: 493-1171 bp Feature: gene Location: 1465-3672 bp Feature: gene Location: 3880-5010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4201-4744 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 01-4744 bp Feature: gene Location: 5061-11102 bp Feature: domain Description: DUF4011 Location: 6291-6804 bp Feature: domain Description: DUF4011 Location: 62 91-6804 bp Feature: domain Description: DEXXQc_SF1 Location: 7143-7584 bp Feature: domain Description: DEXXQc_SF1 Location: 7143-7584 bp Feature: domain Description: DEXXQc_SF1 Location: 8580-9330 bp Feature: domain Description: DEXXQc_SF1 Location: 8580-9330 bp Feature: domain Description: TIGR00376 Location: 9459-9849 bp Feature: domain Description: TIGR00376 Location: 9459-9849 bp Feature: domain Description: MTES_1575 Location: 10002-10287 bp Feature: domain Description: MTES_1575 Location: 10002 -102 87 bp Feature: domain Description: DUF3320 Location: 10617-10752 bp Feature: domain Description: DUF332 0 Location: 10617-10752 bp Feature: gene Location: 11199-12998 bp Feature: domain Description: rpsA Location: 11268-12867 bp Feature: domain Description: rpsA Location: 112 68-12 867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: FOUM01000035.1 (63563 bp)
Overview 1 RT 1: 206-2865 bp Neighborhood of RT #1 [206, 2885] RVT_N RVT-GII GIIM Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 206-412 bp Feature: gene Location: 610-2292 bp Feature: domain Description: RVT_N Location: 691-934 bp Feature: domain Description: RVT_N Location: 691-93 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979-1627 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1912 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1912 bp Feature: gene Location: 2295-2705 bp Feature: domain Description: Bac_Flav_CT_G Location: 2412-2703 bp Feature: domain Description: Bac_Flav_CT_G Location: 2412-2703 bp Feature: gene Location: 2721-2885 bp Feature: domain Description: Bac_Flav_CT_G Location: 2727-2865 bp Feature: domain Description: Bac_Flav_CT_G Location: 2727-2865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783)

Seq: FOUM01000004.1 (224026 bp)
Overview 1 RT 1: 122-4427 bp Neighborhood of RT #1 [122, 4432] RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 122-1804 bp Feature: domain Description: RVT_N Location: 203-446 bp Feature: domain Description: RVT_N Location: 203-4 4 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491-1139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 91-1139 bp Feature: domain Description: GIIM Note: maturase Location: 1190-1424 bp Feature: domain Description: GIIM Note: maturase Location: 1190-14 24 bp Feature: gene Location: 2002-2208 bp Feature: gene Location: 2402-4432 bp Feature: domain Description: Bac_Flav_CT_G Location: 2405-4427 bp Feature: domain Description: Bac_Flav_CT_G Location: 24 05-4 4 27 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783)

Seq: FOUM01000036.1 (61755 bp)
Overview 1 RT 1: 206-6679 bp Neighborhood of RT #1 [206, 7140] RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 206-412 bp Feature: gene Location: 610-2292 bp Feature: domain Description: RVT_N Location: 691-934 bp Feature: domain Description: RVT_N Location: 691-934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979-1627 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1912 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1912 bp Feature: gene Location: 2295-2780 bp Feature: domain Description: Bac_Flav_CT_G Location: 2412-2769 bp Feature: domain Description: Bac_Flav_CT_G Location: 2412-2769 bp Feature: gene Location: 3349-5172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3613-4435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3613-4435 bp Feature: domain Description: Intron_maturas2 Location: 4609-4852 bp Feature: domain Description: Intron_maturas2 Location: 4609-485 2 bp Feature: domain Description: HNHc Note: nucleases Location: 4963-5134 bp Feature: domain Description: HNHc Note: nucleases Location: 4963-5 134 bp Feature: gene Location: 5406-6461 bp Feature: gene Location: 6511-7140 bp Feature: domain Description: DUF4141 Location: 6523-6679 bp Feature: domain Description: DUF4141 Location: 65 23-6679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: FOUM01000064.1 (23480 bp)
Overview 1 RT 1: 3-6417 bp Neighborhood of RT #1 [3, 6417] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII KOG4768 RVT-GII Intron_maturas2 Trehalase GDB1 Feature: gene Location: 3-251 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 120-228 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 120-228 bp Feature: gene Location: 1696-1884 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1702-1849 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1702-1849 bp Feature: gene Location: 1979-2122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982-2102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982-2102 bp Feature: gene Location: 2193-2384 bp Feature: domain Description: KOG4768 Location: 2250-2382 bp Feature: domain Description: KOG476 8 Location: 2250-2382 bp Feature: gene Location: 2424-2972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2430-2496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2430-2496 bp Feature: domain Description: Intron_maturas2 Location: 2568-2877 bp Feature: domain Description: Intron_maturas2 Location: 256 8-2877 bp Feature: gene Location: 3367-6114 bp Feature: domain Description: Trehalase Location: 4633-4894 bp Feature: domain Description: Trehalase Location: 46 33-4894 bp Feature: domain Description: GDB1 Location: 4978-5746 bp Feature: domain Description: GDB1 Location: 4978-5746 bp Feature: gene Location: 6280-6417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Intron_maturas2 (pfam01348), Trehalase (pfam01204), GDB1 (COG3408)

Seq: FOUM01000034.1 (65564 bp)
Overview 1 RT 1: 33692-37194 bp Neighborhood of RT #1 [33692, 37223] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 33692-33985 bp Feature: gene Location: 34183-34461 bp Feature: gene Location: 34424-35845 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34799-35501 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 347 99-35501 bp Feature: gene Location: 35860-36267 bp Feature: domain Description: Avd_like Location: 35893-36202 bp Feature: domain Description: Avd_like Location: 35893-36202 bp Feature: gene Location: 36414-37223 bp Feature: domain Description: DUF1566 Location: 36945-37194 bp Feature: domain Description: DUF1566 Location: 36945-37 194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)