myRT

myRT report for GCA_900115975.1_IMG-taxon_2602042027_annotated_assembly

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Seq: FOYM01000051.1 (9461 bp)
Overview 1 RT 1: 2-1967 bp Neighborhood of RT #1 [2, 2683] Phage_int_SAM_4 RVT-GII COG4584 Feature: gene Location: 2-136 bp Feature: domain Description: Phage_int_SAM_4 Location: 26-137 bp Feature: domain Description: Phage_int_SAM_4 Location: 26-1 37 bp Feature: gene Location: 265-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592-982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592-982 bp Feature: gene Location: 1517-1669 bp Feature: gene Location: 1781-2683 bp Feature: domain Description: COG4584 Location: 1787-1967 bp Feature: domain Description: COG4584 Location: 1 787-1 967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_4 (pfam13495), RVT-GII, COG4584 (Transposase )

Seq: FOYM01000023.1 (60712 bp)
Overview 1 RT 1: 9678-13037 bp Neighborhood of RT #1 [9678, 13037] DUF3854 RVT-GII Feature: gene Location: 9678-10784 bp Feature: domain Description: DUF3854 Location: 10479-10767 bp Feature: domain Description: DUF3854 Location: 10479-10767 bp Feature: gene Location: 10872-11153 bp Feature: gene Location: 11325-12308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11331-11472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11331-11472 bp Feature: gene Location: 12538-12702 bp Feature: gene Location: 12756-13037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3854 (pfam12965), RVT-GII

Seq: FOYM01000064.1 (3209 bp)
Overview 1 RT 1: 89-2896 bp Neighborhood of RT #1 [89, 2958] RVT-GII HNHc Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 89-1024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104-311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104-3 11 bp Feature: domain Description: HNHc Note: nucleases Location: 902-998 bp Feature: domain Description: HNHc Note: nucleases Location: 902-998 bp Feature: gene Location: 1230-2240 bp Feature: domain Description: Phage_int_SAM_1 Location: 1275-1518 bp Feature: domain Description: Phage_int_SAM_1 Location: 1275-1518 bp Feature: domain Description: INT_RitC_C_like Location: 1608-2160 bp Feature: domain Description: INT_RitC_C_like Location: 1608-2160 bp Feature: gene Location: 2227-2958 bp Feature: domain Description: INT_RitB_C_like Location: 2308-2896 bp Feature: domain Description: INT_RitB_C_like Location: 23 08-2896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)

Seq: FOYM01000014.1 (102293 bp)
Overview 1 RT 1: 2-3529 bp Neighborhood of RT #1 [2, 3582] RVT-GII GIIM PIN_VapC4-5_FitB-like Feature: gene Location: 2-238 bp Feature: gene Location: 400-618 bp Feature: gene Location: 738-2228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1584 bp Feature: domain Description: GIIM Note: maturase Location: 1695-1845 bp Feature: domain Description: GIIM Note: maturase Location: 1695-184 5 bp Feature: gene Location: 2304-2924 bp Feature: gene Location: 3133-3582 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 3136-3529 bp Feature: domain Description: PIN_VapC4 -5_FitB-like Location: 3136-3529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PIN_VapC4-5_FitB-like (cd18754)

Seq: FOYM01000074.1 (2050 bp)
Overview 1 RT 1: 176-1792 bp Neighborhood of RT #1 [176, 1878] RVT-GII GIIM Feature: gene Location: 176-349 bp Feature: gene Location: 418-564 bp Feature: gene Location: 631-1878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835 -1492 bp Feature: domain Description: GIIM Note: maturase Location: 1573-1792 bp Feature: domain Description: GIIM Note: maturase Location: 15 73-1792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FOYM01000054.1 (8350 bp)
Overview 1 RT 1: 109-3676 bp Neighborhood of RT #1 [109, 3676] RVT-GII Intron_maturas2 COG3587 Feature: gene Location: 109-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1204 bp Feature: domain Description: Intron_maturas2 Location: 1276-1675 bp Feature: domain Description: Intron_maturas2 Location: 1276 -16 75 bp Feature: gene Location: 2490-3221 bp Feature: domain Description: COG3587 Location: 2496-3159 bp Feature: domain Description: COG3587 Location: 2496 -3159 bp Feature: gene Location: 3335-3676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), COG3587 (Restriction endonuclease )

Seq: FOYM01000042.1 (17802 bp)
Overview 1 RT 1: 4951-11438 bp Neighborhood of RT #1 [4951, 11698] Avd_like RVT-DGRs Prophage_tail Cu_amine_oxidN1 Feature: gene Location: 4951-5997 bp Feature: gene Location: 6102-6401 bp Feature: domain Description: Avd_like Location: 6105-6390 bp Feature: domain Description: Avd_like Location: 6105-6390 bp Feature: gene Location: 6727-7797 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6937-7588 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6937 -7 588 bp Feature: gene Location: 7854-10511 bp Feature: domain Description: Prophage_tail Location: 8046-9054 bp Feature: domain Description: Prophage_tail Location: 8046-9054 bp Feature: gene Location: 10763-11698 bp Feature: domain Description: Cu_amine_oxidN1 Location: 11312-11438 bp Feature: domain Description: Cu_amine_oxidN1 Location: 11312-11438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, Prophage_tail (pfam06605), Cu_amine_oxidN1 (pfam07833)

Seq: FOYM01000003.1 (166063 bp)
Overview 1 RT 1: 161151-166060 bp Neighborhood of RT #1 [161151, 166060] eps_fam AmiC Glucosaminidase RVT-GII GIIM Feature: gene Location: 161151-161843 bp Feature: domain Description: eps_fam Location: 161205-161811 bp Feature: domain Description: eps_fam Location: 161205-1618 11 bp Feature: gene Location: 161937-163733 bp Feature: domain Description: AmiC Location: 161952-162480 bp Feature: domain Description: AmiC Location: 161952-16248 0 bp Feature: domain Description: Glucosaminidase Location: 162600-162963 bp Feature: domain Description: Glucosaminidase Location: 162600-162963 bp Feature: gene Location: 163836-165326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164076-164682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164076-16468 2 bp Feature: domain Description: GIIM Note: maturase Location: 164793-164943 bp Feature: domain Description: GIIM Note: maturase Location: 164793-164943 bp Feature: gene Location: 165500-166060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT eps_fam (TIGR01007), AmiC (COG0860), Glucosaminidase (pfam01832), RVT-GII, GIIM (pfam08388)