myRT

myRT report for GCA_900116445.1_IMG-taxon_2671180117_annotated_assembly

Download annotations/find similar RTs

Seq: FPBH01000028.1 (132685 bp)
Overview 1 RT 1: 35275-43848 bp Neighborhood of RT #1 [35275, 43848] DUF3732 RVT-Retrons recD_rel Feature: gene Location: 35275-35760 bp Feature: gene Location: 35889-37736 bp Feature: domain Description: DUF3732 Location: 37161-37698 bp Feature: domain Description: DUF3732 Location: 371 61 -37698 bp Feature: gene Location: 37868-39607 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37952-38582 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37952-38582 bp Feature: gene Location: 40692-42941 bp Feature: domain Description: recD_rel Location: 40968-42867 bp Feature: domain Description: recD_rel Location: 40968-42867 bp Feature: gene Location: 43414-43848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3732 (pfam12532), RVT-Retrons, recD_rel (TIGR01448)

Seq: FPBH01000056.1 (37842 bp)
Overview 1 RT 1: 16739-20681 bp Neighborhood of RT #1 [16739, 20956] LysR RVT-GII GIIM WcaG Feature: gene Location: 16739-17677 bp Feature: domain Description: LysR Location: 16751-17630 bp Feature: domain Description: LysR Location: 16751-17630 bp Feature: gene Location: 17724-17957 bp Feature: gene Location: 18114-19352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18363-18999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18363-18999 bp Feature: domain Description: GIIM Note: maturase Location: 19068-19284 bp Feature: domain Description: GIIM Note: maturase Location: 19068-192 84 bp Feature: gene Location: 19811-20083 bp Feature: gene Location: 20123-20956 bp Feature: domain Description: WcaG Location: 20165-20681 bp Feature: domain Description: WcaG Location: 2 0165-2 0681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT-GII, GIIM (pfam08388), WcaG (COG0451)

Seq: FPBH01000004.1 (499813 bp)
Overview 1 RT 1: 182691-187291 bp 2 RT 2: 190415-195884 bp Neighborhood of RT #1 [182691, 187314] InsE InsE DDE_Tnp_IS240 RVT-GII GIIM Phage_int_SAM_4 INT_RitA_C_like Neighborhood of RT #2 [190415, 195892] IstB_IS21 RVT-GII GIIM Rve cztS_silS_copS Feature: gene Location: 182691-183350 bp Feature: domain Description: InsE Location: 182775-182913 bp Feature: domain Description: InsE Location: 182775-182913 bp Feature: domain Description: InsE Location: 183063-183234 bp Feature: domain Description: InsE Location: 183 063 -183 23 4 bp Feature: gene Location: 183436-183588 bp Feature: domain Description: DDE_Tnp_IS240 Location: 183442-183547 bp Feature: domain Description: DDE_Tnp_IS240 Location: 183 442-183 547 bp Feature: gene Location: 183887-185278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184259-184898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184259-184898 bp Feature: domain Description: GIIM Note: maturase Location: 184973-185192 bp Feature: domain Description: GIIM Note: maturase Location: 184973 -185192 bp Feature: gene Location: 185371-185973 bp Feature: gene Location: 186073-187314 bp Feature: domain Description: Phage_int_SAM_4 Location: 186442-186688 bp Feature: domain Description: Phage_int_SAM_4 Location: 186442-186688 bp Feature: domain Description: INT_RitA_C_like Location: 186763-187291 bp Feature: domain Description: INT_RitA_C_like Location: 186763 -187291 bp Feature: gene Location: 190415-191185 bp Feature: domain Description: IstB_IS21 Location: 190583-191111 bp Feature: domain Description: IstB_IS21 Location: 190583 -191111 bp Feature: gene Location: 191997-192146 bp Feature: gene Location: 192374-193618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192578-193232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192578-193 23 2 bp Feature: domain Description: GIIM Note: maturase Location: 193313-193538 bp Feature: domain Description: GIIM Note: maturase Location: 193 3 13 -193 53 8 bp Feature: gene Location: 194109-194408 bp Feature: domain Description: Rve Location: 194139-194340 bp Feature: domain Description: Rve Location: 19413 9-1943 40 bp Feature: gene Location: 194537-195892 bp Feature: domain Description: cztS_silS_copS Location: 194558-195884 bp Feature: domain Description: cztS_silS_copS Location: 194558-195884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), DDE_Tnp_IS240 (pfam13610), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), IstB_IS21 (pfam01695), Rve (COG3316), cztS_silS_copS (TIGR01386)

Seq: FPBH01000024.1 (160931 bp)
Overview 1 RT 1: 156481-160877 bp Neighborhood of RT #1 [156481, 160930] CtpA RVT-GII ESPR LbR_YadA-like YadA_head Feature: gene Location: 156481-158022 bp Feature: domain Description: CtpA Location: 156601-157759 bp Feature: domain Description: CtpA Location: 156601-157759 bp Feature: gene Location: 158138-158392 bp Feature: gene Location: 158666-159262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158675-158879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158675-158879 bp Feature: gene Location: 160235-160930 bp Feature: domain Description: ESPR Location: 160238-160301 bp Feature: domain Description: ESPR Location: 160238-160301 bp Feature: domain Description: LbR_YadA-like Location: 160448-160736 bp Feature: domain Description: LbR_YadA-like Location: 1604 4 8-160736 bp Feature: domain Description: YadA_head Location: 160799-160877 bp Feature: domain Description: YadA_head Location: 160799-160877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CtpA (COG0793), RVT-GII, ESPR (pfam13018), LbR_YadA-like (cd12820), YadA_head (pfam05658)