myRT

myRT report for GCA_900118605.1_4880_2_8

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Seq: FPIK01000659.1 (201 bp)
Overview 1 RT 1: 3-177 bp Neighborhood of RT #1 [3, 200] RVT-UNC Feature: gene Location: 3-200 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 72-177 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 72-1 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-G2L/RVT-G2L4/RVT-GII(RVT-UNC)

Seq: FPIK01000342.1 (240 bp)
Overview 1 RT 1: 3-240 bp Neighborhood of RT #1 [3, 239] RVT-GII Feature: gene Location: 3-239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75-240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75-2 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FPIK01000008.1 (5541 bp)
Overview 1 RT 1: 1-5185 bp Neighborhood of RT #1 [1, 5538] RVT-UNC RVT_thumb RNase_HI_RT_Bel Integrase_Zn rve RVT-UNC RVT_thumb Feature: gene Location: 1-2127 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 190-427 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 190-427 bp Feature: domain Description: RVT_thumb Location: 472-667 bp Feature: domain Description: RVT_thumb Location: 472-667 bp Feature: domain Description: RNase_HI_RT_Bel Location: 1111-1477 bp Feature: domain Description: RNase_HI_RT_Bel Location: 1111-1477 bp Feature: domain Description: Integrase_Zn Location: 1510-1618 bp Feature: domain Description: Integrase_Zn Location: 1510-1618 bp Feature: domain Description: rve Location: 1666-1993 bp Feature: domain Description: rve Location: 1666-1993 bp Feature: gene Location: 2733-3005 bp Feature: gene Location: 3888-4160 bp Feature: gene Location: 4429-5538 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4708-4945 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4708-4945 bp Feature: domain Description: RVT_thumb Location: 4990-5185 bp Feature: domain Description: RVT_thumb Location: 4990-5185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-CRISPR/RVT-UG21/RVT-DGRs(RVT-UNC), RVT_thumb (pfam06817), RNase_HI_RT_Bel (cd09273), Integrase_Zn (pfam02022), rve (pfam00665)

Seq: FPIK01000006.1 (10981 bp)
Overview 1 RT 1: 388-7433 bp Neighborhood of RT #1 [388, 7433] rve trimeric_dUTPase RT_ZFREV_like RVT-UNC RT_RNaseH_2 RNase_H rve DUF5535 Feature: gene Location: 388-606 bp Feature: gene Location: 672-2150 bp Feature: domain Description: rve Location: 1092-1428 bp Feature: domain Description: rve Location: 1092-14 28 bp Feature: domain Description: trimeric_dUTPase Location: 1656-1914 bp Feature: domain Description: trimeric_dUTPase Location: 1656-1914 bp Feature: gene Location: 2159-5434 bp Feature: domain Description: RT_ZFREV_like Location: 2453-2816 bp Feature: domain Description: RT_ZFREV_like Location: 24 53-2816 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3131-3377 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3131-3377 bp Feature: domain Description: RT_RNaseH_2 Location: 3578-3875 bp Feature: domain Description: RT_RNaseH_2 Location: 3578-3875 bp Feature: domain Description: RNase_H Location: 4148-4565 bp Feature: domain Description: RNase_H Location: 4 14 8-4 565 bp Feature: domain Description: rve Location: 4790-5126 bp Feature: domain Description: rve Location: 4 790-5126 bp Feature: gene Location: 5609-7051 bp Feature: domain Description: DUF5535 Location: 6836-6959 bp Feature: domain Description: DUF5535 Location: 6836-6959 bp Feature: gene Location: 7092-7433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), trimeric_dUTPase (cl00493), RT_ZFREV_like (cd03715), RVT-UG11/RVT-CRISPR/RVT-G2L4/RVT-UG26(RVT-UNC), RT_RNaseH_2 (pfam17919), RNase_H (pfam00075), DUF5535 (pfam17687)

Seq: FPIK01000007.1 (4132 bp)
Overview 1 RT 1: 1093-3490 bp Neighborhood of RT #1 [1093, 3690] RVT-UG11 dUTPase HIV_retropepsin_like G_patch Gag_p24 ZnF_C2HC ZnF_C2HC Feature: gene Location: 1093-1392 bp Feature: gene Location: 1557-2252 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1890-2103 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1890-2103 bp Feature: gene Location: 2345-3112 bp Feature: domain Description: dUTPase Location: 2363-2576 bp Feature: domain Description: dUTPase Location: 2363-25 76 bp Feature: domain Description: HIV_retropepsin_like Location: 2675-2930 bp Feature: domain Description: HIV_retropepsin_like Location: 2675 -2930 bp Feature: domain Description: G_patch Location: 2978-3107 bp Feature: domain Description: G_patch Location: 2978-3107 bp Feature: gene Location: 3121-3690 bp Feature: domain Description: Gag_p24 Location: 3127-3301 bp Feature: domain Description: Gag_p24 Location: 3127-3301 bp Feature: domain Description: ZnF_C2HC Location: 3364-3409 bp Feature: domain Description: ZnF_C2HC Location: 3364-3409 bp Feature: domain Description: ZnF_C2HC Location: 3445-3490 bp Feature: domain Description: ZnF_C2HC Location: 3445 -3490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, dUTPase (PHA03131), HIV_retropepsin_like (cd05482), G_patch (smart00443), Gag_p24 (pfam00607), ZnF_C2HC (smart00343)

Seq: FPIK01000024.1 (742 bp)
Overview 1 RT 1: 3-732 bp Neighborhood of RT #1 [3, 740] RVT-GII Feature: gene Location: 3-740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189-732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189-732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII