myRT

myRT report for GCA_900118725.1_4880_2_2

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Seq: FPIL01000184.1 (267 bp)
Overview 1 RT 1: 1-232 bp Neighborhood of RT #1 [1, 264] RVT-UNC Feature: gene Location: 1-264 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 76-232 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 76-232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-UG28/RVT-GII(RVT-UNC)

Seq: FPIL01000020.1 (1219 bp)
Overview 1 RT 1: 3-1140 bp Neighborhood of RT #1 [3, 1217] RT_nLTR_like RVT-UNC Feature: gene Location: 3-1217 bp Feature: domain Description: RT_nLTR_like Location: 48-240 bp Feature: domain Description: RT_nLTR_like Location: 48-2 40 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 504-1140 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 504-1140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_nLTR_like (cd01650), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: FPIL01000019.1 (1535 bp)
Overview 1 RT 1: 2-1494 bp Neighborhood of RT #1 [2, 1532] RVT-GII RVT-GII Feature: gene Location: 2-823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-63 8 bp Feature: gene Location: 897-1532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FPIL01000207.1 (252 bp)
Overview 1 RT 1: 3-243 bp Neighborhood of RT #1 [3, 251] RVT-GII Feature: gene Location: 3-251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-24 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FPIL01000005.1 (6801 bp)
Overview 1 RT 1: 2-4385 bp Neighborhood of RT #1 [2, 4477] RVT-UNC RT_RNaseH_2 DUF5535 DUF5535 Feature: gene Location: 2-1465 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 659-905 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 65 9-905 bp Feature: domain Description: RT_RNaseH_2 Location: 1106-1403 bp Feature: domain Description: RT_RNaseH_2 Location: 1106-1403 bp Feature: gene Location: 1640-2629 bp Feature: domain Description: DUF5535 Location: 2375-2501 bp Feature: domain Description: DUF5 5 35 Location: 2375 -25 01 bp Feature: gene Location: 2804-4477 bp Feature: domain Description: DUF5535 Location: 4262-4385 bp Feature: domain Description: DUF5 5 35 Location: 4262-4385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-CRISPR/RVT-UG26(RVT-UNC), RT_RNaseH_2 (pfam17919), DUF5535 (pfam17687)

Seq: FPIL01000006.1 (7657 bp)
Overview 1 RT 1: 2753-7480 bp Neighborhood of RT #1 [2753, 7485] RVT-UNC RVT_thumb RNase_HI_RT_Bel dUTPase HIV_retropepsin_like G_patch Feature: gene Location: 2753-3019 bp Feature: gene Location: 3166-3351 bp Feature: gene Location: 4997-6583 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 5327-5564 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 5327-556 4 bp Feature: domain Description: RVT_thumb Location: 5609-5804 bp Feature: domain Description: RVT_thumb Location: 56 09-5804 bp Feature: domain Description: RNase_HI_RT_Bel Location: 6248-6527 bp Feature: domain Description: RNase_HI_RT_Bel Location: 6 248-6 527 bp Feature: gene Location: 6676-7485 bp Feature: domain Description: dUTPase Location: 6682-6949 bp Feature: domain Description: dUTPase Location: 6 6 82-6 949 bp Feature: domain Description: HIV_retropepsin_like Location: 7048-7303 bp Feature: domain Description: HIV_retropepsin_like Location: 7048-7303 bp Feature: domain Description: G_patch Location: 7351-7480 bp Feature: domain Description: G_patch Location: 7351-7480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-CRISPR/RVT-DGRs/RVT-UG21(RVT-UNC), RVT_thumb (pfam06817), RNase_HI_RT_Bel (cd09273), dUTPase (PHA03131), HIV_retropepsin_like (cd05482), G_patch (smart00443)

Seq: FPIL01000271.1 (227 bp)
Overview 1 RT 1: 3-153 bp Neighborhood of RT #1 [3, 224] RVT-DGRs Feature: gene Location: 3-224 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24-153 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24-153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs