myRT

myRT report for GCA_900118795.1_4880_2_4

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Seq: FPIJ01000012.1 Chlamydophila abortus strain T20 genome assembly, contig: ERS003308SCcontig000012, whole genome shotgun sequence (6427 bp)
Overview 1 RT 1: 141-6425 bp Neighborhood of RT #1 [141, 6425] RVT-GII RVT-GII RT_nLTR_like DUF1725 Feature: gene Location: 141-353 bp Feature: gene Location: 397-4626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1882-2536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 882-2536 bp Feature: domain Description: RT_nLTR_like Location: 3793-4102 bp Feature: domain Description: RT_nLTR_like Location: 3793-41 02 bp Feature: gene Location: 4723-5637 bp Feature: domain Description: DUF1725 Location: 5506-5557 bp Feature: domain Description: DUF1 725 Location: 5506-5557 bp Feature: gene Location: 5664-6425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RT_nLTR_like (cd01650), DUF1725 (pfam08333)

Seq: FPIJ01000008.1 Chlamydophila abortus strain T20 genome assembly, contig: ERS003308SCcontig000008, whole genome shotgun sequence (5280 bp)
Overview 1 RT 1: 3-3801 bp Neighborhood of RT #1 [3, 3801] HIV_retropepsin_like G_patch RVT-UNC RVT_thumb RNase_HI_RT_Bel RNase_HI_RT_Bel Integrase_Zn rve IN_DBD_C Feature: gene Location: 3-608 bp Feature: domain Description: HIV_retropepsin_like Location: 171-426 bp Feature: domain Description: HIV_retropepsin_like Location: 171-42 6 bp Feature: domain Description: G_patch Location: 474-603 bp Feature: domain Description: G_patch Location: 474-603 bp Feature: gene Location: 656-2242 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1031-1268 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1031-12 68 bp Feature: domain Description: RVT_thumb Location: 1313-1508 bp Feature: domain Description: RVT_thumb Location: 1313-1508 bp Feature: domain Description: RNase_HI_RT_Bel Location: 1952-2219 bp Feature: domain Description: RNase_HI_RT_Bel Location: 1952 -2 2 19 bp Feature: gene Location: 2295-3566 bp Feature: domain Description: RNase_HI_RT_Bel Location: 2310-2625 bp Feature: domain Description: RNase_HI_RT_Bel Location: 2 310-2 62 5 bp Feature: domain Description: Integrase_Zn Location: 2658-2766 bp Feature: domain Description: Integrase_Zn Location: 2 658-2 766 bp Feature: domain Description: rve Location: 2814-3141 bp Feature: domain Description: rve Location: 2 814-3141 bp Feature: domain Description: IN_DBD_C Location: 3297-3444 bp Feature: domain Description: IN_DBD_C Location: 32 97-3444 bp Feature: gene Location: 3619-3801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HIV_retropepsin_like (cd05482), G_patch (smart00443), RVT-UG11/RVT-CRISPR/RVT-UG21/RVT-DGRs(RVT-UNC), RVT_thumb (pfam06817), RNase_HI_RT_Bel (cd09273), Integrase_Zn (pfam02022), rve (pfam00665), IN_DBD_C (pfam00552)

Seq: FPIJ01000005.1 Chlamydophila abortus strain T20 genome assembly, contig: ERS003308SCcontig000005, whole genome shotgun sequence (7259 bp)
Overview 1 RT 1: 946-7083 bp Neighborhood of RT #1 [946, 7214] RVT-UNC RT_RNaseH_2 RNase_H rve trimeric_dUTPase RT_ZFREV_like DUF5535 Feature: gene Location: 946-1095 bp Feature: gene Location: 1250-1468 bp Feature: gene Location: 1534-4668 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1951-2197 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1951-2197 bp Feature: domain Description: RT_RNaseH_2 Location: 2398-2695 bp Feature: domain Description: RT_RNaseH_2 Location: 23 98-2695 bp Feature: domain Description: RNase_H Location: 2968-3385 bp Feature: domain Description: RNase_H Location: 2968-3 3 85 bp Feature: domain Description: rve Location: 3610-3946 bp Feature: domain Description: rve Location: 3 610-3 946 bp Feature: domain Description: trimeric_dUTPase Location: 4174-4432 bp Feature: domain Description: trimeric_dUTPase Location: 4174-443 2 bp Feature: gene Location: 4689-5324 bp Feature: domain Description: RT_ZFREV_like Location: 4983-5313 bp Feature: domain Description: RT_ZFREV_like Location: 4983 -53 13 bp Feature: gene Location: 5499-7214 bp Feature: domain Description: DUF5535 Location: 6960-7083 bp Feature: domain Description: DUF553 5 Location: 6960-7083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-CRISPR/RVT-G2L4/RVT-UG26(RVT-UNC), RT_RNaseH_2 (pfam17919), RNase_H (pfam00075), rve (pfam00665), trimeric_dUTPase (cl00493), RT_ZFREV_like (cd03715), DUF5535 (pfam17687)

Seq: FPIJ01000028.1 Chlamydophila abortus strain T20 genome assembly, contig: ERS003308SCcontig000028, whole genome shotgun sequence (2302 bp)
Overview 1 RT 1: 1-1776 bp Neighborhood of RT #1 [1, 2300] DUF1725 RVT-UG11 Feature: gene Location: 1-1389 bp Feature: domain Description: DUF1725 Location: 1288-1342 bp Feature: domain Description: DUF1725 Location: 1288-134 2 bp Feature: gene Location: 1509-2300 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1572-1776 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1572-1776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1725 (pfam08333), RVT-UG11

Seq: FPIJ01000019.1 Chlamydophila abortus strain T20 genome assembly, contig: ERS003308SCcontig000019, whole genome shotgun sequence (670 bp)
Overview 1 RT 1: 3-666 bp Neighborhood of RT #1 [3, 668] RVT-UNC Feature: gene Location: 3-668 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 39-666 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 39-666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: FPIJ01000132.1 Chlamydophila abortus strain T20 genome assembly, contig: ERS003308SCcontig000132, whole genome shotgun sequence (248 bp)
Overview 1 RT 1: 3-198 bp Neighborhood of RT #1 [3, 245] RVT-UNC Feature: gene Location: 3-245 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 9-198 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 9-198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-UG28/RVT-UG3(RVT-UNC)