myRT

myRT report for GCA_900128425.1_PRJEB18044

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Seq: LT635777.1 (1235 bp)
Overview 1 RT 1: 2-992 bp Neighborhood of RT #1 [2, 1174] RVT-GII GIIM Feature: gene Location: 2-1174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110-725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0-725 bp Feature: domain Description: GIIM Note: maturase Location: 776-992 bp Feature: domain Description: GIIM Note: maturase Location: 776-992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LT635782.1 (1988991 bp)
Overview 1 RT 1: 73654-78643 bp 2 RT 2: 947479-959545 bp 3 RT 3: 1615237-1627240 bp 4 RT 4: 1821423-1827514 bp 5 RT 5: 1835607-1840873 bp Neighborhood of RT #1 [73654, 78681] PpiB RVT-GII GIIM RlmL PG_binding_4 PG_binding_4 YkuD_like Neighborhood of RT #2 [947479, 959583] DEDD_Tnp_IS110 COG3547 Phage_int_SAM_4 xerC RVT-GII GIIM PHA03307 Peptidases_S8_C5a_Peptidase fn3_5 RepA_N Neighborhood of RT #3 [1615237, 1627257] FrsA KOG4391 RVT-GII GIIM RVT-GII LacZ Glyco_hydro2_C5 Big_4 FIVAR FIVAR Glyco_hydro_20b NAGidase F5_F8_type_C F5_F8_type_C FIVAR FIVAR FIVAR Neighborhood of RT #4 [1821423, 1827543] LRR_5 GdhA RVT-GII GIIM PGDH_2 nitrilase_5 Neighborhood of RT #5 [1835607, 1840887] AccB OAD_gamma RVT-GII GIIM RVT-GII GltS nitrilase_5 Feature: gene Location: 73654-74181 bp Feature: domain Description: PpiB Location: 73678-74140 bp Feature: domain Description: PpiB Location: 73678-74140 bp Feature: gene Location: 74402-74668 bp Feature: gene Location: 74710-75990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74917-75532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74917-75532 bp Feature: domain Description: GIIM Note: maturase Location: 75595-75826 bp Feature: domain Description: GIIM Note: maturase Location: 75595-7582 6 bp Feature: gene Location: 76126-77250 bp Feature: domain Description: RlmL Location: 76129-77242 bp Feature: domain Description: RlmL Location: 7612 9-772 42 bp Feature: gene Location: 77266-78681 bp Feature: domain Description: PG_binding_4 Location: 77488-77818 bp Feature: domain Description: PG_binding_4 Location: 77488-77818 bp Feature: domain Description: PG_binding_4 Location: 77863-78193 bp Feature: domain Description: PG_binding_4 Location: 77863-78193 bp Feature: domain Description: YkuD_like Location: 78268-78643 bp Feature: domain Description: YkuD_like Location: 782 68-78643 bp Feature: gene Location: 947479-948654 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 947491-947962 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 947491-947962 bp Feature: domain Description: COG3547 Location: 948202-948616 bp Feature: domain Description: COG3547 Location: 9482 02 -948616 bp Feature: gene Location: 949479-950444 bp Feature: domain Description: Phage_int_SAM_4 Location: 949548-949719 bp Feature: domain Description: Phage_int_SAM_4 Location: 949548-949719 bp Feature: domain Description: xerC Location: 949869-949986 bp Feature: domain Description: xerC Location: 949869-949986 bp Feature: gene Location: 950522-951778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950714-951329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950714-95132 9 bp Feature: domain Description: GIIM Note: maturase Location: 951380-951596 bp Feature: domain Description: GIIM Note: maturase Location: 951380-951596 bp Feature: gene Location: 952360-959220 bp Feature: domain Description: PHA03307 Location: 952528-952864 bp Feature: domain Description: PHA03307 Location: 952 52 8-952 864 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 953224-954877 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 9532 2 4-954877 bp Feature: domain Description: fn3_5 Location: 954946-955363 bp Feature: domain Description: fn3_5 Location: 954946-955363 bp Feature: gene Location: 959404-959583 bp Feature: domain Description: RepA_N Location: 959452-959545 bp Feature: domain Description: RepA_N Location: 959452 -959545 bp Feature: gene Location: 1615237-1616199 bp Feature: domain Description: FrsA Location: 1615540-1616173 bp Feature: domain Description: FrsA Location: 1615540-1616173 bp Feature: gene Location: 1616196-1617134 bp Feature: domain Description: KOG4391 Location: 1616418-1617129 bp Feature: domain Description: KOG4391 Location: 1616418-161712 9 bp Feature: gene Location: 1617219-1617812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617225-1617363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16172 2 5-1617363 bp Feature: domain Description: GIIM Note: maturase Location: 1617414-1617630 bp Feature: domain Description: GIIM Note: maturase Location: 1617414-1617630 bp Feature: gene Location: 1617941-1618474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1618133-1618469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1618133-1618469 bp Feature: gene Location: 1619035-1623504 bp Feature: domain Description: LacZ Location: 1619185-1621255 bp Feature: domain Description: LacZ Location: 1619185-162 12 55 bp Feature: domain Description: Glyco_hydro2_C5 Location: 1621378-1621669 bp Feature: domain Description: Glyco_hydro2 _C5 Location: 162 1378-162 1669 bp Feature: domain Description: Big_4 Location: 1621759-1621903 bp Feature: domain Description: Big_4 Location: 162 1759-162 1903 bp Feature: domain Description: FIVAR Location: 1622905-1623082 bp Feature: domain Description: FIVAR Location: 162 2 905-162 3082 bp Feature: domain Description: FIVAR Location: 1623115-1623313 bp Feature: domain Description: FIVAR Location: 162 3115-162 3313 bp Feature: gene Location: 1623598-1627257 bp Feature: domain Description: Glyco_hydro_20b Location: 1623733-1624141 bp Feature: domain Description: Glyco_hydro_2 0b Location: 162 3733-162 4141 bp Feature: domain Description: NAGidase Location: 1624159-1625083 bp Feature: domain Description: NAGidase Location: 162 4159-162 5083 bp Feature: domain Description: F5_F8_type_C Location: 1625617-1625971 bp Feature: domain Description: F5_F8_type_C Location: 162 5617-162 5971 bp Feature: domain Description: F5_F8_type_C Location: 1626463-1626577 bp Feature: domain Description: F5_F8_type_C Location: 162 6463-162 6577 bp Feature: domain Description: FIVAR Location: 1626646-1626820 bp Feature: domain Description: FIVAR Location: 162 6646-162 682 0 bp Feature: domain Description: FIVAR Location: 1626862-1627045 bp Feature: domain Description: FIVAR Location: 162 6862 -162 7045 bp Feature: domain Description: FIVAR Location: 1627066-1627240 bp Feature: domain Description: FIVAR Location: 162 7066-162 72 40 bp Feature: gene Location: 1821423-1822007 bp Feature: domain Description: LRR_5 Location: 1821573-1821933 bp Feature: domain Description: LRR_5 Location: 182 1573-182 1933 bp Feature: gene Location: 1822418-1823683 bp Feature: domain Description: GdhA Location: 1822436-1823681 bp Feature: domain Description: GdhA Location: 182 2 436-182 3681 bp Feature: gene Location: 1823778-1825169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1824105-1824720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 4105-182 472 0 bp Feature: domain Description: GIIM Note: maturase Location: 1824771-1824987 bp Feature: domain Description: GIIM Note: maturase Location: 182 4771-182 4987 bp Feature: gene Location: 1825684-1826628 bp Feature: domain Description: PGDH_2 Location: 1825687-1826620 bp Feature: domain Description: PGDH_2 Location: 182 5687-182 662 0 bp Feature: gene Location: 1826752-1827543 bp Feature: domain Description: nitrilase_5 Location: 1826761-1827514 bp Feature: domain Description: nitrilase_5 Location: 182 6761-182 7514 bp Feature: gene Location: 1835607-1836017 bp Feature: domain Description: AccB Location: 1835628-1836012 bp Feature: domain Description: AccB Location: 183562 8-1836012 bp Feature: gene Location: 1836033-1836365 bp Feature: domain Description: OAD_gamma Location: 1836111-1836324 bp Feature: domain Description: OAD_gamma Location: 1836111-183632 4 bp Feature: gene Location: 1836786-1837523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1836795-1837074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1836795-1837074 bp Feature: domain Description: GIIM Note: maturase Location: 1837125-1837341 bp Feature: domain Description: GIIM Note: maturase Location: 183712 5-1837341 bp Feature: gene Location: 1837581-1838177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1837908-1838172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1837908-1838172 bp Feature: gene Location: 1838613-1839845 bp Feature: domain Description: GltS Location: 1838634-1839834 bp Feature: domain Description: GltS Location: 1838634-1839834 bp Feature: gene Location: 1840090-1840887 bp Feature: domain Description: nitrilase_5 Location: 1840123-1840873 bp Feature: domain Description: nitrilase_5 Location: 184012 3-1840873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PpiB (COG0652), RVT-GII, GIIM (pfam08388), RlmL (COG0116), PG_binding_4 (pfam12229), YkuD_like (cl21614), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), Phage_int_SAM_4 (pfam13495), xerC (PRK01287)
PHA03307 (transcriptional regulator ICP4; Provisional), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), RepA_N (pfam06970), FrsA (COG1073), KOG4391 (KOG4391, Predicted alpha/beta hydrolase BEM46 ), LacZ (COG3250), Glyco_hydro2_C5 (pfam18565), Big_4 (pfam07532), FIVAR (pfam07554)
Glyco_hydro_20b (pfam02838), NAGidase (pfam07555), F5_F8_type_C (pfam00754), LRR_5 (pfam13306), GdhA (COG0334), PGDH_2 (cd05303), nitrilase_5 (cd07583), AccB (COG0511), OAD_gamma (pfam04277), GltS (COG0786)