myRT

myRT report for GCA_900128455.1_PRJEB18046

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Seq: LT635796.1 (2671 bp)
Overview 1 RT 1: 187-2456 bp Neighborhood of RT #1 [187, 2456] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 187-2010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451-1273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 -1 273 bp Feature: domain Description: Intron_maturas2 Location: 1447-1690 bp Feature: domain Description: Intron_maturas2 Location: 1 447-1 690 bp Feature: domain Description: HNHc Note: nucleases Location: 1801-1972 bp Feature: domain Description: HNHc Note: nucleases Location: 1 801 -1 972 bp Feature: gene Location: 2268-2456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT635783.1 (4034845 bp)
Overview 1 RT 1: 17873-27398 bp 2 RT 2: 196578-202713 bp 3 RT 3: 337797-350909 bp 4 RT 4: 1567841-1577592 bp 5 RT 5: 1615423-1621500 bp 6 RT 6: 1788222-1796184 bp 7 RT 7: 2207403-2215912 bp 8 RT 8: 3489644-3492464 bp Neighborhood of RT #1 [17873, 27781] HTH_ARAC RVT_N RVT-GII GIIM N6_Mtase COG4646 Neighborhood of RT #2 [196578, 202721] DUF4141 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #3 [337797, 350947] YprA YprA YprA RVT_N RVT-GII GIIM Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #4 [1567841, 1577603] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII GIIM AraC Neighborhood of RT #5 [1615423, 1621961] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 Neighborhood of RT #6 [1788222, 1796184] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Neighborhood of RT #7 [2207403, 2215941] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT-GII DUF4141 SesA Bac_Flav_CT_J Neighborhood of RT #8 [3489644, 3492464] RVT-DGRs Feature: gene Location: 17873-19012 bp Feature: domain Description: HTH_ARAC Location: 18749-18965 bp Feature: domain Description: HTH_ARAC Location: 18749-18965 bp Feature: gene Location: 19398-20600 bp Feature: gene Location: 20602-22269 bp Feature: domain Description: RVT_N Location: 20656-20899 bp Feature: domain Description: RVT_N Location: 2 0656-2 0899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20944-21592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0944-2 1592 bp Feature: domain Description: GIIM Note: maturase Location: 21646-21877 bp Feature: domain Description: GIIM Note: maturase Location: 2 1646-2 1877 bp Feature: gene Location: 22412-22567 bp Feature: gene Location: 22928-27781 bp Feature: domain Description: N6_Mtase Location: 23240-23828 bp Feature: domain Description: N6_Mtase Location: 2 32 40-2 382 8 bp Feature: domain Description: COG4646 Location: 25331-27398 bp Feature: domain Description: COG4646 Location: 2 5331-2 7398 bp Feature: gene Location: 196578-197216 bp Feature: domain Description: DUF4141 Location: 196605-196755 bp Feature: domain Description: DUF4141 Location: 196605-196755 bp Feature: gene Location: 197253-197666 bp Feature: domain Description: DUF3876 Location: 197364-197619 bp Feature: domain Description: DUF3876 Location: 197364-197619 bp Feature: gene Location: 197927-199750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198191-199013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198191-199013 bp Feature: domain Description: Intron_maturas2 Location: 199187-199430 bp Feature: domain Description: Intron_maturas2 Location: 199187-199430 bp Feature: domain Description: HNHc Note: nucleases Location: 199541-199712 bp Feature: domain Description: HNHc Note: nucleases Location: 199541-199712 bp Feature: gene Location: 200008-200196 bp Feature: gene Location: 200319-202721 bp Feature: domain Description: Bac_Flav_CT_G Location: 200322-202713 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 0032 2 -2 02 713 bp Feature: gene Location: 337797-343934 bp Feature: domain Description: YprA Location: 338079-338820 bp Feature: domain Description: YprA Location: 338079-33882 0 bp Feature: domain Description: YprA Location: 340971-341352 bp Feature: domain Description: YprA Location: 340971-341352 bp Feature: domain Description: YprA Location: 342594-342813 bp Feature: domain Description: YprA Location: 342 594-342 813 bp Feature: gene Location: 343937-347134 bp Feature: gene Location: 347314-348804 bp Feature: domain Description: RVT_N Location: 347383-347626 bp Feature: domain Description: RVT_N Location: 347383-34762 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347671-348316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347671-348316 bp Feature: domain Description: GIIM Note: maturase Location: 348370-348604 bp Feature: domain Description: GIIM Note: maturase Location: 348370-348604 bp Feature: gene Location: 349111-349278 bp Feature: gene Location: 349844-350947 bp Feature: domain Description: Arm-DNA-bind_5 Location: 349874-350132 bp Feature: domain Description: Arm-DNA-bind_5 Location: 349874-350132 bp Feature: domain Description: Phage_int_SAM_5 Location: 350183-350486 bp Feature: domain Description: Phage_int_SAM_5 Location: 350183-350486 bp Feature: domain Description: INTN1_C_like Location: 350537-350909 bp Feature: domain Description: INTN1_C_like Location: 350537-350909 bp Feature: gene Location: 1567841-1568293 bp Feature: domain Description: DUF1896 Location: 1567871-1568288 bp Feature: domain Description: DUF1896 Location: 1567871-15682 88 bp Feature: gene Location: 1568280-1573091 bp Feature: domain Description: N6_Mtase Location: 1568592-1569180 bp Feature: domain Description: N6_Mtase Location: 1568592 -1569180 bp Feature: domain Description: COG4646 Location: 1570710-1572708 bp Feature: domain Description: COG4646 Location: 1570710-1572 708 bp Feature: gene Location: 1573748-1575415 bp Feature: domain Description: RVT_N Location: 1573802-1574045 bp Feature: domain Description: RVT_N Location: 1573802 -1574045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1574090-1574738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1574090-1574738 bp Feature: domain Description: GIIM Note: maturase Location: 1574792-1575023 bp Feature: domain Description: GIIM Note: maturase Location: 1574792 -157502 3 bp Feature: gene Location: 1575369-1576643 bp Feature: gene Location: 1576698-1577603 bp Feature: domain Description: AraC Location: 1577217-1577592 bp Feature: domain Description: AraC Location: 15772 17-1577592 bp Feature: gene Location: 1615423-1615821 bp Feature: domain Description: DUF4133 Location: 1615441-1615711 bp Feature: domain Description: DUF4133 Location: 1615441-1615711 bp Feature: gene Location: 1615818-1618220 bp Feature: domain Description: Bac_Flav_CT_G Location: 1615821-1618212 bp Feature: domain Description: Bac_Flav_CT_G Location: 161582 1-16182 12 bp Feature: gene Location: 1618789-1620612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1619053-1619875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1619053-1619875 bp Feature: domain Description: Intron_maturas2 Location: 1620049-1620292 bp Feature: domain Description: Intron_maturas2 Location: 162 0049-162 02 92 bp Feature: domain Description: HNHc Note: nucleases Location: 1620403-1620574 bp Feature: domain Description: HNHc Note: nucleases Location: 162 0403-162 0574 bp Feature: gene Location: 1620873-1621283 bp Feature: domain Description: DUF3876 Location: 1620978-1621239 bp Feature: domain Description: DUF3876 Location: 162 0978-162 12 39 bp Feature: gene Location: 1621323-1621961 bp Feature: domain Description: DUF4141 Location: 1621350-1621500 bp Feature: domain Description: DUF4141 Location: 162 1350-162 1500 bp Feature: gene Location: 1788222-1790252 bp Feature: domain Description: Bac_Flav_CT_G Location: 1788225-1790247 bp Feature: domain Description: Bac_Flav_CT_G Location: 17882 2 5-17902 47 bp Feature: gene Location: 1790445-1790651 bp Feature: gene Location: 1790830-1792530 bp Feature: domain Description: RVT_N Location: 1790929-1791172 bp Feature: domain Description: RVT_N Location: 179092 9-1791172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1791217-1791865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17912 17-1791865 bp Feature: domain Description: GIIM Note: maturase Location: 1791916-1792150 bp Feature: domain Description: GIIM Note: maturase Location: 1791916-1792 150 bp Feature: gene Location: 1792533-1793123 bp Feature: domain Description: Bac_Flav_CT_G Location: 1792650-1793109 bp Feature: domain Description: Bac_Flav_CT_G Location: 1792 650-1793109 bp Feature: gene Location: 1793130-1793396 bp Feature: gene Location: 1793399-1795099 bp Feature: domain Description: RVT_N Location: 1793498-1793741 bp Feature: domain Description: RVT_N Location: 1793498-1793741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793786-1794434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793786-1794434 bp Feature: domain Description: GIIM Note: maturase Location: 1794485-1794719 bp Feature: domain Description: GIIM Note: maturase Location: 1794485-1794719 bp Feature: gene Location: 1795278-1795484 bp Feature: gene Location: 1795642-1796184 bp Feature: gene Location: 2207403-2209436 bp Feature: domain Description: Bac_Flav_CT_G Location: 2207406-2209431 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 2 07406-2 2 09431 bp Feature: gene Location: 2209629-2209835 bp Feature: gene Location: 2210014-2211714 bp Feature: domain Description: RVT_N Location: 2210113-2210356 bp Feature: domain Description: RVT_N Location: 2 2 10113-2 2 10356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2210401-2211049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 10401-2 2 11049 bp Feature: domain Description: GIIM Note: maturase Location: 2211100-2211334 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 11100-2 2 11334 bp Feature: gene Location: 2211717-2212202 bp Feature: domain Description: Bac_Flav_CT_G Location: 2211834-2212194 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 2 11834-2 2 12 194 bp Feature: gene Location: 2212771-2214195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213035-2213857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 13035-2 2 13857 bp Feature: gene Location: 2214304-2214933 bp Feature: domain Description: DUF4141 Location: 2214319-2214472 bp Feature: domain Description: DUF4141 Location: 2 2 14319-2 2 14472 bp Feature: domain Description: SesA Location: 2214478-2214808 bp Feature: domain Description: SesA Location: 2 2 14478-2 2 14808 bp Feature: gene Location: 2214937-2215941 bp Feature: domain Description: Bac_Flav_CT_J Location: 2214943-2215912 bp Feature: domain Description: Bac_Flav_CT_J Location: 2 2 14943-2 2 15912 bp Feature: gene Location: 3489644-3489877 bp Feature: gene Location: 3489899-3490156 bp Feature: gene Location: 3490253-3491554 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3490466-3491060 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3490466-3491060 bp Feature: gene Location: 3491587-3492036 bp Feature: gene Location: 3492222-3492464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT635793.1 (2411 bp)
Overview 1 RT 1: 122-2207 bp Neighborhood of RT #1 [122, 2207] RVT_N RVT-GII GIIM Feature: gene Location: 122-1822 bp Feature: domain Description: RVT_N Location: 221-464 bp Feature: domain Description: RVT_N Location: 221-464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1157 bp Feature: domain Description: GIIM Note: maturase Location: 1208-1442 bp Feature: domain Description: GIIM Note: maturase Location: 1208-1442 bp Feature: gene Location: 2001-2207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT