myRT

myRT report for GCA_900129165.1_IMG-taxon_2582581271_annotated_assembly

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Seq: FQUA01000009.1 (114367 bp)
Overview 1 RT 1: 106-3680 bp Neighborhood of RT #1 [106, 3685] RVT-GII GIIM COG2865 Feature: gene Location: 106-1404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-1048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 -1 048 bp Feature: domain Description: GIIM Note: maturase Location: 1108-1336 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 08-1 336 bp Feature: gene Location: 2019-2210 bp Feature: gene Location: 2399-3685 bp Feature: domain Description: COG2865 Location: 2405-3680 bp Feature: domain Description: COG2865 Location: 2405-3680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: FQUA01000012.1 (93899 bp)
Overview 1 RT 1: 50644-55018 bp Neighborhood of RT #1 [50644, 55018] EbsA RVT-Retrons Feature: gene Location: 50644-51066 bp Feature: domain Description: EbsA Location: 50719-51031 bp Feature: domain Description: EbsA Location: 50719-51031 bp Feature: gene Location: 51218-51583 bp Feature: gene Location: 52232-53164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52268-52859 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 2 68-52 859 bp Feature: gene Location: 53170-54426 bp Feature: gene Location: 54476-55018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EbsA, RVT-Retrons

Seq: FQUA01000005.1 (170419 bp)
Overview 1 RT 1: 106-4092 bp 2 RT 2: 51385-63945 bp 3 RT 3: 69824-76407 bp 4 RT 4: 142401-148174 bp Neighborhood of RT #1 [106, 4097] RVT-GII GIIM PRK00183 Neighborhood of RT #2 [51385, 63983] COG4646 HELICc RVT-GII HNHc LPD16 Spo0A_C Neighborhood of RT #3 [69824, 76407] Spr TraC-F-type RVT-GII Intron_maturas2 HNHc Neighborhood of RT #4 [142401, 148383] TadB VirB11 RVT-GII HNHc CpaE-like Feature: gene Location: 106-1404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-1048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 61-1048 bp Feature: domain Description: GIIM Note: maturase Location: 1108-1336 bp Feature: domain Description: GIIM Note: maturase Location: 1108-13 3 6 bp Feature: gene Location: 2100-3407 bp Feature: gene Location: 3516-4097 bp Feature: domain Description: PRK00183 Location: 3987-4092 bp Feature: domain Description: PRK00183 Location: 3 987-4092 bp Feature: gene Location: 51385-51672 bp Feature: gene Location: 51834-56024 bp Feature: domain Description: COG4646 Location: 52068-54654 bp Feature: domain Description: COG4646 Location: 52068-54654 bp Feature: domain Description: HELICc Location: 54708-55074 bp Feature: domain Description: HELICc Location: 54708-55074 bp Feature: gene Location: 56212-58158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56608-57343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56608-573 43 bp Feature: domain Description: HNHc Note: nucleases Location: 57883-58048 bp Feature: domain Description: HNHc Note: nucleases Location: 57883 -58048 bp Feature: gene Location: 58758-63437 bp Feature: domain Description: LPD16 Location: 61761-62016 bp Feature: domain Description: LPD16 Location: 61761-62016 bp Feature: gene Location: 63747-63983 bp Feature: domain Description: Spo0A_C Location: 63759-63945 bp Feature: domain Description: Spo0A_C Location: 63 759-63 945 bp Feature: gene Location: 69824-71539 bp Feature: domain Description: Spr Location: 71174-71513 bp Feature: domain Description: Spr Location: 71174-71513 bp Feature: gene Location: 71541-72965 bp Feature: domain Description: TraC-F-type Location: 71577-72801 bp Feature: domain Description: TraC-F-type Location: 71577-72801 bp Feature: gene Location: 73114-74913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73387-74197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 3 87-74197 bp Feature: domain Description: Intron_maturas2 Location: 74281-74569 bp Feature: domain Description: Intron_maturas2 Location: 74281-74569 bp Feature: domain Description: HNHc Note: nucleases Location: 74740-74893 bp Feature: domain Description: HNHc Note: nucleases Location: 74740-74893 bp Feature: gene Location: 74986-75243 bp Feature: gene Location: 75448-76407 bp Feature: gene Location: 142401-143330 bp Feature: domain Description: TadB Location: 142521-143307 bp Feature: domain Description: TadB Location: 142521-143 3 07 bp Feature: gene Location: 143327-144433 bp Feature: domain Description: VirB11 Location: 143399-144107 bp Feature: domain Description: VirB11 Location: 143 3 99-144107 bp Feature: gene Location: 144482-146356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144845-145541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144845-145541 bp Feature: domain Description: HNHc Note: nucleases Location: 146093-146210 bp Feature: domain Description: HNHc Note: nucleases Location: 146093 -146210 bp Feature: gene Location: 147041-147580 bp Feature: gene Location: 147574-148383 bp Feature: domain Description: CpaE-like Location: 147682-148174 bp Feature: domain Description: CpaE-like Location: 147682-148174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK00183 (hypothetical protein; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), HNHc (smart00507), LPD16 (pfam18830), Spo0A_C (pfam08769), Spr (COG0791), TraC-F-type (TIGR02746)
Intron_maturas2 (pfam01348), TadB (COG4965), VirB11 (TIGR02788), CpaE-like (cd03111)

Seq: FQUA01000002.1 (355706 bp)
Overview 1 RT 1: 86644-90652 bp Neighborhood of RT #1 [86644, 90652] PpiB RVT-UG7 HipB Feature: gene Location: 86644-87165 bp Feature: domain Description: PpiB Location: 86668-87118 bp Feature: domain Description: PpiB Location: 86668-87118 bp Feature: gene Location: 87169-87345 bp Feature: gene Location: 87536-89080 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 87914-88334 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 87914 -88334 bp Feature: gene Location: 89247-90146 bp Feature: domain Description: HipB Location: 89433-89709 bp Feature: domain Description: HipB Location: 894 33-89709 bp Feature: gene Location: 90317-90652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PpiB (COG0652), RVT-UG7, HipB (COG1396)

Seq: FQUA01000024.1 (7558 bp)
Overview 1 RT 1: 1054-6961 bp Neighborhood of RT #1 [1054, 7029] RVT-GII GIIM Feature: gene Location: 1054-1188 bp Feature: gene Location: 1198-5172 bp Feature: gene Location: 5731-7029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5986-6673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 986-6673 bp Feature: domain Description: GIIM Note: maturase Location: 6733-6961 bp Feature: domain Description: GIIM Note: maturase Location: 6733-6961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)