myRT

myRT report for GCA_900129185.1_IMG-taxon_2582581274_annotated_assembly

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Seq: FQUH01000004.1 (246888 bp)
Overview 1 RT 1: 174089-178154 bp Neighborhood of RT #1 [174089, 178154] Peptidase_C39_2 RVT-Retrons HTH_XRE Feature: gene Location: 174089-176137 bp Feature: domain Description: Peptidase_C39_2 Location: 174590-175019 bp Feature: domain Description: Peptidase_C39_2 Location: 1 74590-1 7501 9 bp Feature: gene Location: 176193-176351 bp Feature: gene Location: 176635-177522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 176704-177277 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 76704-1 77277 bp Feature: gene Location: 177585-177869 bp Feature: domain Description: HTH_XRE Location: 177597-177762 bp Feature: domain Description: HTH_XRE Location: 1 77597-1 77762 bp Feature: gene Location: 177921-178154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C39_2 (pfam13529), RVT-Retrons, HTH_XRE (smart00530)

Seq: FQUH01000002.1 (346323 bp)
Overview 1 RT 1: 8536-16535 bp 2 RT 2: 235334-241187 bp Neighborhood of RT #1 [8536, 16735] DUF5051 CRISPR_Cas2 CRISPR_Cas6 RVT-CRISPR Cas_Cas1 TIGR03986 Csm3_III-A Csm3_III-A Csm3_III-A Csm3_III-A Neighborhood of RT #2 [235334, 241240] Cas2_I_II_III CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III DUF1874 Csx1_III-U Feature: gene Location: 8536-9090 bp Feature: domain Description: DUF5051 Location: 8539-9064 bp Feature: domain Description: DUF5051 Location: 8539-9064 bp Feature: gene Location: 9622-9900 bp Feature: domain Description: CRISPR_Cas2 Location: 9631-9823 bp Feature: domain Description: CRISPR_Cas2 Location: 9631-982 3 bp Feature: gene Location: 9920-12751 bp Feature: domain Description: CRISPR_Cas6 Location: 10415-10799 bp Feature: domain Description: CRISPR_Cas6 Location: 10415-10799 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11021-11624 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1102 1-1162 4 bp Feature: domain Description: Cas_Cas1 Location: 11804-12623 bp Feature: domain Description: Cas_Cas1 Location: 11804-12 62 3 bp Feature: gene Location: 12757-15177 bp Feature: domain Description: TIGR03986 Location: 12781-14845 bp Feature: domain Description: TIGR03986 Location: 12 781-14845 bp Feature: gene Location: 15179-16735 bp Feature: domain Description: Csm3_III-A Location: 15200-15374 bp Feature: domain Description: Csm3_III-A Location: 152 00-15374 bp Feature: domain Description: Csm3_III-A Location: 15518-15806 bp Feature: domain Description: Csm3_III-A Location: 15518-15806 bp Feature: domain Description: Csm3_III-A Location: 16064-16178 bp Feature: domain Description: Csm3_III-A Location: 16064-16178 bp Feature: domain Description: Csm3_III-A Location: 16211-16535 bp Feature: domain Description: Csm3_III-A Location: 162 11-16535 bp Feature: gene Location: 235334-235549 bp Feature: gene Location: 235604-235897 bp Feature: domain Description: Cas2_I_II_III Location: 235628-235859 bp Feature: domain Description: Cas2 _I_II_III Location: 2 3562 8-2 35859 bp Feature: gene Location: 235882-238932 bp Feature: domain Description: CRISPR_Cas6 Location: 236458-236731 bp Feature: domain Description: CRISPR_Cas6 Location: 2 36458-2 36731 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 236959-237547 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 36959-2 37547 bp Feature: domain Description: Cas1_I-II-III Location: 237982-238897 bp Feature: domain Description: Cas1_I-II-III Location: 2 37982 -2 38897 bp Feature: gene Location: 239032-239349 bp Feature: domain Description: DUF1874 Location: 239041-239278 bp Feature: domain Description: DUF1874 Location: 2 39041-2 392 78 bp Feature: gene Location: 239354-241240 bp Feature: domain Description: Csx1_III-U Location: 241013-241187 bp Feature: domain Description: Csx1_III-U Location: 2 41013-2 41187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5051 (pfam16473), CRISPR_Cas2 (pfam09827), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas_Cas1 (pfam01867), TIGR03986 (CRISPR-associated protein), Csm3_III-A (cd09684), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), DUF1874 (pfam08960)
Csx1_III-U (cl21570)