myRT

myRT report for GCA_900129355.1_IMG-taxon_2695420940_annotated_assembly

Download annotations/find similar RTs

Seq: FQVL01000001.1 (917212 bp)
Overview 1 RT 1: 203793-207840 bp Neighborhood of RT #1 [203793, 207878] CFF1 RVT-Retrons DsbD_2 Cps2a Feature: gene Location: 203793-203990 bp Feature: gene Location: 204173-204739 bp Feature: domain Description: CFF1 Location: 204242-204731 bp Feature: domain Description: CFF1 Location: 204242-204731 bp Feature: gene Location: 204883-205839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 205108-205612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2051 08-20561 2 bp Feature: gene Location: 205937-206680 bp Feature: domain Description: DsbD_2 Location: 206027-206645 bp Feature: domain Description: DsbD_2 Location: 206027-206645 bp Feature: gene Location: 206826-207878 bp Feature: domain Description: Cps2a Location: 206883-207840 bp Feature: domain Description: Cps2a Location: 206883-207840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CFF1 (COG3542), RVT-Retrons, DsbD_2 (pfam13386), Cps2a (COG1316)

Seq: FQVL01000010.1 (103710 bp)
Overview 1 RT 1: 82393-87506 bp Neighborhood of RT #1 [82393, 87506] NagC RVT-GII PRK06241 Feature: gene Location: 82393-83286 bp Feature: domain Description: NagC Location: 82396-83269 bp Feature: domain Description: NagC Location: 82 396-832 69 bp Feature: gene Location: 83518-83718 bp Feature: gene Location: 83656-84084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83698-84022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83698-8402 2 bp Feature: gene Location: 84469-87090 bp Feature: domain Description: PRK06241 Location: 84472-87088 bp Feature: domain Description: PRK062 41 Location: 84472 -87088 bp Feature: gene Location: 87255-87506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NagC (COG1940), RVT-GII, PRK06241 (phosphoenolpyruvate synthase; Validated)

Seq: FQVL01000004.1 (255117 bp)
Overview 1 RT 1: 33695-39177 bp Neighborhood of RT #1 [33695, 39177] nucleoid_noc BcsQ RVT-GII matK nucleoid_noc Feature: gene Location: 33695-34546 bp Feature: domain Description: nucleoid_noc Location: 33764-34388 bp Feature: domain Description: nucleoid_noc Location: 3 3 764-3 43 88 bp Feature: gene Location: 34539-35192 bp Feature: domain Description: BcsQ Location: 34545-35187 bp Feature: domain Description: BcsQ Location: 3 4545-3 5187 bp Feature: gene Location: 35486-36874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35774-36377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5774-3 63 77 bp Feature: domain Description: matK Location: 36479-36701 bp Feature: domain Description: matK Location: 3 6479-3 6701 bp Feature: gene Location: 38016-39008 bp Feature: domain Description: nucleoid_noc Location: 38232-38997 bp Feature: domain Description: nucleoid_noc Location: 3 823 2-3 8997 bp Feature: gene Location: 38980-39177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nucleoid_noc (TIGR04285), BcsQ (COG1192), RVT-GII, matK (CHL00002)

Seq: FQVL01000012.1 (91245 bp)
Overview 1 RT 1: 3-3716 bp Neighborhood of RT #1 [3, 3730] RVT-GII SufI fabG Feature: gene Location: 3-194 bp Feature: gene Location: 442-729 bp Feature: gene Location: 836-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-114 8 bp Feature: gene Location: 1328-3430 bp Feature: domain Description: SufI Location: 2162-3371 bp Feature: domain Description: SufI Location: 2162-3371 bp Feature: gene Location: 3488-3730 bp Feature: domain Description: fabG Location: 3605-3716 bp Feature: domain Description: fabG Location: 3605-3716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SufI (COG2132), fabG (PRK12825)

Seq: FQVL01000006.1 (199918 bp)
Overview 1 RT 1: 166787-174270 bp Neighborhood of RT #1 [166787, 174270] YqiK RVT-Retrons SWIM Feature: gene Location: 166787-168313 bp Feature: domain Description: YqiK Location: 166814-168239 bp Feature: domain Description: YqiK Location: 166814-168239 bp Feature: gene Location: 168509-168703 bp Feature: gene Location: 168741-170162 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169302-169920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169302-169920 bp Feature: gene Location: 170155-171816 bp Feature: domain Description: SWIM Location: 171670-171775 bp Feature: domain Description: SWIM Location: 171670-171775 bp Feature: gene Location: 171832-174270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqiK (COG2268), RVT-Retrons, SWIM (pfam04434)