myRT

myRT report for GCA_900129505.1_IMG-taxon_2695420948_annotated_assembly

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Seq: LT670818.1 (9184751 bp)
Overview 1 RT 1: 1019178-1021932 bp 2 RT 2: 1466170-1470710 bp 3 RT 3: 2344268-2350818 bp 4 RT 4: 4078411-4084288 bp 5 RT 5: 4437398-4441073 bp 6 RT 6: 5265948-5269896 bp 7 RT 7: 5677909-5680642 bp 8 RT 8: 6229341-6232848 bp 9 RT 9: 6591173-6597960 bp 10 RT 10: 7174675-7178653 bp 11 RT 11: 7279659-7284145 bp 12 RT 12: 7444046-7452076 bp 13 RT 13: 7544712-7548610 bp 14 RT 14: 8580693-8585072 bp 15 RT 15: 9056637-9061412 bp Neighborhood of RT #1 [1019178, 1021973] RVT-GII PBP1_ABC_uncharacterized_transporter Neighborhood of RT #2 [1466170, 1470784] RVT-GII group_II_RT_mat sensory_box PAC PRK11360 sensory_box TMAO_torS HPT Neighborhood of RT #3 [2344268, 2350940] HTH_XRE ImmA RVT-Retrons Resolvase Recombinase DUF2924 Neighborhood of RT #4 [4078411, 4084288] Pyrophosphatase PRK13560 PRK13560 sensory_box PRK13560 RVT-GII GIIM DUF1236 DUF1236 Neighborhood of RT #5 [4437398, 4441168] RVT-GII Pyrid_ox_like AcrR Neighborhood of RT #6 [5265948, 5269907] COG5361 RVT-GII PEP_mutase Neighborhood of RT #7 [5677909, 5680647] RVT-GII GIIM DapD_actino Neighborhood of RT #8 [6229341, 6232976] PilZ RVT-GII GIIM DUF2147 Neighborhood of RT #9 [6591173, 6598025] RVT-GII RVT-GII EmrA FUSC FUSC Neighborhood of RT #10 [7174675, 7178706] PRK07059 RVT-GII PRK09692 INT_P4_C Neighborhood of RT #11 [7279659, 7284294] RVT-GII HxlR SsuE Neighborhood of RT #12 [7444046, 7452090] AgaS RVT-GII GIIM ArsB_permease Neighborhood of RT #13 [7544712, 7548990] RVT-GII GIIM PRK08317 Neighborhood of RT #14 [8580693, 8585188] PadR RVT-GII GIIM COG4191 MEDS Neighborhood of RT #15 [9056637, 9061412] AcyC DUF3551 RVT-GII Feature: gene Location: 1019178-1019552 bp Feature: gene Location: 1019649-1019822 bp Feature: gene Location: 1019870-1021348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020281-1020971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020281 -1 020971 bp Feature: gene Location: 1021373-1021663 bp Feature: gene Location: 1021794-1021973 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 1021854-1021932 bp Feature: domain Description: PBP1 _ABC_uncharacterized_transporter Location: 1 021 854-1 021 932 bp Feature: gene Location: 1466170-1466298 bp Feature: gene Location: 1466642-1466872 bp Feature: gene Location: 1466967-1467236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1466976-1467141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 466976-1 4671 41 bp Feature: gene Location: 1467426-1467884 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1467675-1467819 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 467675-1 46781 9 bp Feature: gene Location: 1468055-1470784 bp Feature: domain Description: sensory_box Location: 1468106-1468250 bp Feature: domain Description: sensory_box Location: 1 4681 06-1 468250 bp Feature: domain Description: PAC Location: 1468364-1468469 bp Feature: domain Description: PAC Location: 1 468364-1 468469 bp Feature: domain Description: PRK11360 Location: 1468490-1468907 bp Feature: domain Description: PRK1 1 360 Location: 1 468490-1 468907 bp Feature: domain Description: sensory_box Location: 1468946-1469294 bp Feature: domain Description: sensory_box Location: 1 468946-1 469294 bp Feature: domain Description: TMAO_torS Location: 1469294-1470488 bp Feature: domain Description: TMAO_torS Location: 1 469294-1 470488 bp Feature: domain Description: HPT Location: 1470539-1470710 bp Feature: domain Description: HPT Location: 1 470539-1 47071 0 bp Feature: gene Location: 2344268-2344993 bp Feature: gene Location: 2345106-2346230 bp Feature: domain Description: HTH_XRE Location: 2345112-2345232 bp Feature: domain Description: HTH_XRE Location: 23451 1 2-2345232 bp Feature: domain Description: ImmA Location: 2345445-2346006 bp Feature: domain Description: ImmA Location: 2345445-2346006 bp Feature: gene Location: 2346457-2348481 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2346592-2347213 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2346592-234721 3 bp Feature: gene Location: 2348693-2350384 bp Feature: domain Description: Resolvase Location: 2348735-2349194 bp Feature: domain Description: Resolvase Location: 2348735-23491 94 bp Feature: domain Description: Recombinase Location: 2349257-2349539 bp Feature: domain Description: Recombinase Location: 2349257-2349539 bp Feature: gene Location: 2350377-2350940 bp Feature: domain Description: DUF2924 Location: 2350416-2350818 bp Feature: domain Description: DUF2924 Location: 235041 6-235081 8 bp Feature: gene Location: 4078411-4078926 bp Feature: domain Description: Pyrophosphatase Location: 4078465-4078915 bp Feature: domain Description: Pyrophosphatase Location: 4078465-407891 5 bp Feature: gene Location: 4079194-4081044 bp Feature: domain Description: PRK13560 Location: 4079275-4079611 bp Feature: domain Description: PRK1 3560 Location: 4079275-407961 1 bp Feature: domain Description: PRK13560 Location: 4079677-4080049 bp Feature: domain Description: PRK1 3560 Location: 4079677-4080049 bp Feature: domain Description: sensory_box Location: 4080052-4080427 bp Feature: domain Description: sensory_box Location: 4080052-4080427 bp Feature: domain Description: PRK13560 Location: 4080433-4081024 bp Feature: domain Description: PRK1 3560 Location: 4080433-4081 024 bp Feature: gene Location: 4081633-4083042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4082032-4082620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4082032-4082620 bp Feature: domain Description: GIIM Note: maturase Location: 4082674-4082878 bp Feature: domain Description: GIIM Note: maturase Location: 4082674-4082878 bp Feature: gene Location: 4083133-4084281 bp Feature: domain Description: DUF1236 Location: 4083772-4083973 bp Feature: domain Description: DUF1 236 Location: 4083772-4083973 bp Feature: domain Description: DUF1236 Location: 4084081-4084279 bp Feature: domain Description: DUF1 236 Location: 4084081 -4084279 bp Feature: gene Location: 4084010-4084288 bp Feature: gene Location: 4437398-4437703 bp Feature: gene Location: 4437988-4438260 bp Feature: gene Location: 4438264-4439742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4438675-4439365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4438675-4439365 bp Feature: gene Location: 4440012-4440518 bp Feature: domain Description: Pyrid_ox_like Location: 4440066-4440429 bp Feature: domain Description: Pyrid_ox_like Location: 4440066-4440429 bp Feature: gene Location: 4440593-4441168 bp Feature: domain Description: AcrR Location: 4440629-4441073 bp Feature: domain Description: AcrR Location: 4440629-4441 073 bp Feature: gene Location: 5265948-5266229 bp Feature: domain Description: COG5361 Location: 5265951-5266221 bp Feature: domain Description: COG5361 Location: 5265951 -5266221 bp Feature: gene Location: 5266583-5266894 bp Feature: gene Location: 5266948-5268423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5267356-5268046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5267356-5268046 bp Feature: gene Location: 5268707-5268898 bp Feature: gene Location: 5269155-5269907 bp Feature: domain Description: PEP_mutase Location: 5269191-5269896 bp Feature: domain Description: PEP_mutase Location: 52691 91 -5269896 bp Feature: gene Location: 5677909-5678232 bp Feature: gene Location: 5678399-5678587 bp Feature: gene Location: 5678595-5679248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5678598-5678871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5678598-5678871 bp Feature: domain Description: GIIM Note: maturase Location: 5678946-5679165 bp Feature: domain Description: GIIM Note: maturase Location: 5678946-56791 65 bp Feature: gene Location: 5679275-5679424 bp Feature: gene Location: 5679676-5680647 bp Feature: domain Description: DapD_actino Location: 5679694-5680642 bp Feature: domain Description: DapD_actino Location: 5679694-5680642 bp Feature: gene Location: 6229341-6229577 bp Feature: domain Description: PilZ Location: 6229362-6229572 bp Feature: domain Description: PilZ Location: 6229362-6229572 bp Feature: gene Location: 6229806-6230060 bp Feature: gene Location: 6230678-6232003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6230966-6231626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6230966-6231 626 bp Feature: domain Description: GIIM Note: maturase Location: 6231695-6231914 bp Feature: domain Description: GIIM Note: maturase Location: 6231 695-6231 91 4 bp Feature: gene Location: 6232201-6232350 bp Feature: gene Location: 6232392-6232976 bp Feature: domain Description: DUF2147 Location: 6232500-6232848 bp Feature: domain Description: DUF21 47 Location: 6232500-6232848 bp Feature: gene Location: 6591173-6591304 bp Feature: gene Location: 6591707-6591979 bp Feature: gene Location: 6591983-6593461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6592394-6593084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6592394-6593084 bp Feature: gene Location: 6593912-6594439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6593915-6594323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 659391 5-6594323 bp Feature: gene Location: 6594565-6595854 bp Feature: domain Description: EmrA Location: 6594784-6595633 bp Feature: domain Description: EmrA Location: 6594784-6595633 bp Feature: gene Location: 6596064-6598025 bp Feature: domain Description: FUSC Location: 6596211-6596949 bp Feature: domain Description: FUSC Location: 659621 1 -6596949 bp Feature: domain Description: FUSC Location: 6597000-6597960 bp Feature: domain Description: FUSC Location: 6597000-6597960 bp Feature: gene Location: 7174675-7174890 bp Feature: domain Description: PRK07059 Location: 7174717-7174882 bp Feature: domain Description: PRK07059 Location: 71 7471 7-71 74882 bp Feature: gene Location: 7174925-7175119 bp Feature: gene Location: 7175183-7176661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7175594-7176284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 75594-71 76284 bp Feature: gene Location: 7176686-7176976 bp Feature: gene Location: 7177393-7178706 bp Feature: domain Description: PRK09692 Location: 7177399-7177729 bp Feature: domain Description: PRK09692 Location: 71 77399-71 77729 bp Feature: domain Description: INT_P4_C Location: 7178053-7178653 bp Feature: domain Description: INT_P4_C Location: 71 78053-71 78653 bp Feature: gene Location: 7279659-7279814 bp Feature: gene Location: 7279915-7280103 bp Feature: gene Location: 7281371-7282294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7281659-7282244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7281 659-7282244 bp Feature: gene Location: 7283188-7283580 bp Feature: domain Description: HxlR Location: 7283224-7283548 bp Feature: domain Description: HxlR Location: 7283224-7283548 bp Feature: gene Location: 7283695-7284294 bp Feature: domain Description: SsuE Location: 7283710-7284145 bp Feature: domain Description: SsuE Location: 728371 0-72841 45 bp Feature: gene Location: 7444046-7445074 bp Feature: domain Description: AgaS Location: 7444070-7445069 bp Feature: domain Description: AgaS Location: 7444070-7445069 bp Feature: gene Location: 7445426-7447957 bp Feature: gene Location: 7449003-7450328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7449291-7449951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7449291 -7449951 bp Feature: domain Description: GIIM Note: maturase Location: 7450020-7450239 bp Feature: domain Description: GIIM Note: maturase Location: 7450020-7450239 bp Feature: gene Location: 7450397-7450534 bp Feature: gene Location: 7450840-7452090 bp Feature: domain Description: ArsB_permease Location: 7450861-7452076 bp Feature: domain Description: ArsB_permease Location: 7450861 -7452076 bp Feature: gene Location: 7544712-7544891 bp Feature: gene Location: 7545554-7545799 bp Feature: gene Location: 7546202-7547527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7546490-7547150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7546490-75471 50 bp Feature: domain Description: GIIM Note: maturase Location: 7547219-7547438 bp Feature: domain Description: GIIM Note: maturase Location: 754721 9-7547438 bp Feature: gene Location: 7547596-7547733 bp Feature: gene Location: 7548190-7548990 bp Feature: domain Description: PRK08317 Location: 7548280-7548610 bp Feature: domain Description: PRK0831 7 Location: 7548280-754861 0 bp Feature: gene Location: 8580693-8581112 bp Feature: domain Description: PadR Location: 8580840-8581059 bp Feature: domain Description: PadR Location: 8580840-8581 059 bp Feature: gene Location: 8581341-8581613 bp Feature: gene Location: 8581682-8583004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8581970-8582627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8581 970-8582627 bp Feature: domain Description: GIIM Note: maturase Location: 8582696-8582909 bp Feature: domain Description: GIIM Note: maturase Location: 8582696-8582909 bp Feature: gene Location: 8583231-8584529 bp Feature: domain Description: COG4191 Location: 8583690-8584485 bp Feature: domain Description: COG41 91 Location: 8583690-8584485 bp Feature: gene Location: 8584535-8585188 bp Feature: domain Description: MEDS Location: 8584595-8585072 bp Feature: domain Description: MEDS Location: 8584595-8585072 bp Feature: gene Location: 9056637-9057578 bp Feature: domain Description: AcyC Location: 9057018-9057573 bp Feature: domain Description: AcyC Location: 905701 8-9057573 bp Feature: gene Location: 9057675-9058004 bp Feature: domain Description: DUF3551 Location: 9057756-9057963 bp Feature: domain Description: DUF3551 Location: 9057756-9057963 bp Feature: gene Location: 9058168-9059646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9058579-9059269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9058579-9059269 bp Feature: gene Location: 9059671-9059961 bp Feature: gene Location: 9061029-9061412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PBP1_ABC_uncharacterized_transporter, group_II_RT_mat (TIGR04416), sensory_box (TIGR00229), PAC (smart00086), PRK11360 (two-component system sensor histidine kinase AtoS), TMAO_torS (TIGR02956), HPT (smart00073), HTH_XRE (smart00530), ImmA (COG2856)
RVT-Retrons, Resolvase (smart00857), Recombinase (pfam07508), DUF2924 (pfam11149), Pyrophosphatase (pfam00719), PRK13560 (hypothetical protein; Provisional), GIIM (pfam08388), DUF1236 (pfam06823), Pyrid_ox_like (pfam16242), AcrR (COG1309)
COG5361 (Uncharacterized conserved protein ), PEP_mutase (TIGR02320), DapD_actino (TIGR03535), PilZ (pfam07238), DUF2147 (pfam09917), EmrA (COG1566), FUSC (pfam04632), PRK07059 (Long-chain-fatty-acid--CoA ligase; Validated), PRK09692 (Integrase; provisional), INT_P4_C (cd00801)
HxlR (pfam01638), SsuE (COG0431), AgaS (COG2222), ArsB_permease (cd01118), PRK08317 (hypothetical protein; Provisional), PadR (pfam03551), COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system ), MEDS (pfam14417), AcyC (COG2114), DUF3551 (pfam12071)