myRT

myRT report for GCA_900132645.1_10250_1_12

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Seq: FWCV01000034.1 (59386 bp)
Overview 1 RT 1: 19544-38706 bp 2 RT 2: 48081-53229 bp Neighborhood of RT #1 [19544, 38706] RVT_N RVT-GII GIIM HNHc KOG4768 RVT-GII Intron_maturas2 RVT-GII HNHc DEXHc_Mot1 RVT-GII GIIM DUF4145 RAYT RVT-GII GIIM Neighborhood of RT #2 [48081, 53264] Cyt_C5_DNA_methylase RVT-GII HNHc Ssb Feature: gene Location: 19544-20272 bp Feature: gene Location: 20283-20996 bp Feature: gene Location: 21112-22926 bp Feature: domain Description: RVT_N Location: 21166-21412 bp Feature: domain Description: RVT_N Location: 21 1 66-21 41 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21466-22120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 466-221 20 bp Feature: domain Description: GIIM Note: maturase Location: 22183-22417 bp Feature: domain Description: GIIM Note: maturase Location: 221 83-2241 7 bp Feature: domain Description: HNHc Note: nucleases Location: 22630-22777 bp Feature: domain Description: HNHc Note: nucleases Location: 22630-22777 bp Feature: gene Location: 23500-24276 bp Feature: gene Location: 24437-24700 bp Feature: domain Description: KOG4768 Location: 24506-24695 bp Feature: domain Description: KOG4768 Location: 24506-24695 bp Feature: gene Location: 24737-26269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25004-25835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25004-25835 bp Feature: domain Description: Intron_maturas2 Location: 25907-26210 bp Feature: domain Description: Intron_maturas2 Location: 25907-2621 0 bp Feature: gene Location: 27074-28888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27389-28091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27389-28091 bp Feature: domain Description: HNHc Note: nucleases Location: 28619-28769 bp Feature: domain Description: HNHc Note: nucleases Location: 2861 9-28769 bp Feature: gene Location: 29566-30366 bp Feature: domain Description: DEXHc_Mot1 Location: 29599-29845 bp Feature: domain Description: DEXHc_Mot1 Location: 29599-29845 bp Feature: gene Location: 30644-32509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30944-31649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30944-31 649 bp Feature: domain Description: GIIM Note: maturase Location: 31736-31919 bp Feature: domain Description: GIIM Note: maturase Location: 31 736-31 91 9 bp Feature: gene Location: 33258-34196 bp Feature: gene Location: 34265-34510 bp Feature: gene Location: 35556-35762 bp Feature: domain Description: DUF4145 Location: 35559-35748 bp Feature: domain Description: DUF41 45 Location: 35559-35748 bp Feature: gene Location: 35951-36442 bp Feature: domain Description: RAYT Location: 36020-36386 bp Feature: domain Description: RAYT Location: 36020-36386 bp Feature: gene Location: 36456-37700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36660-37314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36660-3731 4 bp Feature: domain Description: GIIM Note: maturase Location: 37398-37611 bp Feature: domain Description: GIIM Note: maturase Location: 37398-3761 1 bp Feature: gene Location: 37770-37943 bp Feature: gene Location: 38566-38706 bp Feature: gene Location: 48081-49094 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 48096-49032 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 48096-49032 bp Feature: gene Location: 49097-49906 bp Feature: gene Location: 50260-52059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50554-51256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50554-51 256 bp Feature: domain Description: HNHc Note: nucleases Location: 51799-51943 bp Feature: domain Description: HNHc Note: nucleases Location: 51 799-51 943 bp Feature: gene Location: 52352-52591 bp Feature: gene Location: 52860-53264 bp Feature: domain Description: Ssb Location: 52863-53229 bp Feature: domain Description: Ssb Location: 52863-53229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Intron_maturas2 (pfam01348), DEXHc_Mot1 (cd17999), DUF4145 (pfam13643), RAYT (COG1943), Cyt_C5_DNA_methylase (cl30459)
Ssb (COG0629)

Seq: FWCV01000005.1 (527817 bp)
Overview 1 RT 1: 270533-275691 bp Neighborhood of RT #1 [270533, 275714] RVT-GII GIIM YitT_membrane spore_ylxY Feature: gene Location: 270533-270751 bp Feature: gene Location: 271053-271238 bp Feature: gene Location: 271886-273151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 272087-272705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 72 087-2 72 705 bp Feature: domain Description: GIIM Note: maturase Location: 272759-272981 bp Feature: domain Description: GIIM Note: maturase Location: 2 72 759-2 72 981 bp Feature: gene Location: 274232-274801 bp Feature: domain Description: YitT_membrane Location: 274256-274787 bp Feature: domain Description: YitT_membrane Location: 2 742 56-2 74787 bp Feature: gene Location: 274965-275714 bp Feature: domain Description: spore_ylxY Location: 275133-275691 bp Feature: domain Description: spore_ylxY Location: 2 75133-2 75691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YitT_membrane (pfam02588), spore_ylxY (TIGR02873)

Seq: FWCV01000007.1 (403553 bp)
Overview 1 RT 1: 380414-383534 bp Neighborhood of RT #1 [380414, 383566] RVT-GII GIIM GIIM DUF1040 Feature: gene Location: 380414-380653 bp Feature: gene Location: 380653-381156 bp Feature: gene Location: 381276-382826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381621-382245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 81621-3 82245 bp Feature: domain Description: GIIM Note: maturase Location: 382317-382443 bp Feature: domain Description: GIIM Note: maturase Location: 3 823 17-3 82443 bp Feature: domain Description: GIIM Note: maturase Location: 382500-382608 bp Feature: domain Description: GIIM Note: maturase Location: 3 82500-3 82608 bp Feature: gene Location: 383125-383265 bp Feature: gene Location: 383333-383566 bp Feature: domain Description: DUF1040 Location: 383426-383534 bp Feature: domain Description: DUF1040 Location: 3 83 426-3 83 53 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF1040 (pfam06288)

Seq: FWCV01000009.1 (395765 bp)
Overview 1 RT 1: 94525-99612 bp Neighborhood of RT #1 [94525, 99668] recJ group_II_RT_mat RVT-GII recJ ssDNA-exonuc_C Feature: gene Location: 94525-94818 bp Feature: domain Description: recJ Location: 94612-94801 bp Feature: domain Description: recJ Location: 94 612-94 801 bp Feature: gene Location: 95540-95887 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 95699-95885 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 95699-95885 bp Feature: gene Location: 96047-97147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96053-96602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96053-96602 bp Feature: gene Location: 97280-97423 bp Feature: gene Location: 97605-99668 bp Feature: domain Description: recJ Location: 97608-98994 bp Feature: domain Description: recJ Location: 97608-98994 bp Feature: domain Description: ssDNA-exonuc_C Location: 99012-99612 bp Feature: domain Description: ssDNA-exonuc_C Location: 99012-99612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recJ (TIGR00644), group_II_RT_mat (TIGR04416), RVT-GII, ssDNA-exonuc_C (pfam10141)

Seq: FWCV01000055.1 (615 bp)
Overview 1 RT 1: 43-613 bp Neighborhood of RT #1 [43, 612] RVT-GII Feature: gene Location: 43-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244-613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244-613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FWCV01000008.1 (400117 bp)
Overview 1 RT 1: 396332-400115 bp Neighborhood of RT #1 [396332, 400114] Phage_int_SAM_3 INT_ICEBs1_C_like RVT-UG12 PRK12476 Feature: gene Location: 396332-397117 bp Feature: domain Description: Phage_int_SAM_3 Location: 396587-396749 bp Feature: domain Description: Phage_int_SAM_3 Location: 396 587-396 749 bp Feature: gene Location: 397127-397753 bp Feature: domain Description: INT_ICEBs1_C_like Location: 397133-397655 bp Feature: domain Description: INT_ICEBs1_C_like Location: 397133-3976 55 bp Feature: gene Location: 397783-399324 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 398134-398554 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 398134-398554 bp Feature: gene Location: 399962-400114 bp Feature: domain Description: PRK12476 Location: 399986-400115 bp Feature: domain Description: PRK12476 Location: 399986 -400115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-UG12, PRK12476 (putative fatty-acid--CoA ligase; Provisional)