myRT

myRT report for GCA_900141755.1_IMG-taxon_2698536816_annotated_assembly

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Seq: LT670844.1 Bradyrhizobium lablabi strain GAS499 genome assembly, chromosome: I (7910099 bp)
Overview 1 RT 1: 284057-288741 bp 2 RT 2: 3274817-3280966 bp 3 RT 3: 4570331-4574621 bp 4 RT 4: 6866925-6876104 bp 5 RT 5: 7011255-7019151 bp Neighborhood of RT #1 [284057, 289094] COG4274 2_5_RNA_ligase2 RVT-GII HmoA Neighborhood of RT #2 [3274817, 3281061] HigB antidote_HigA RVT-GII GIIM GT4_AviGT4-like AmyAc_OligoGlu_like Malt_amylase_C Neighborhood of RT #3 [4570331, 4574621] Acetyltransf_1 Acetyltransf_18 RVT-UG11 Neighborhood of RT #4 [6866925, 6876109] CAP_bacterial MdlB RVT-GII GIIM ALDH_HMSADH_HapE MhpD Neighborhood of RT #5 [7011255, 7019165] Lipocalin_5 PRK07066 RVT-GII GIIM YfdV GlcD BBE Feature: gene Location: 284057-284350 bp Ori: SHJ30995.1 Feature: domain Description: COG4274 Location: 284060-284345 bp Feature: domain Description: COG4274 Location: 284060-284345 bp Feature: gene Location: 284611-285141 bp Ori: SHJ31032.1 Feature: domain Description: 2_5_RNA_ligase2 Location: 284668-285091 bp Feature: domain Description: 2_5_RNA_ligase2 Location: 284668-285091 bp Feature: gene Location: 285318-286796 bp Ori: SHJ31071.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285729-286419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285729-28641 9 bp Feature: gene Location: 287350-287940 bp Feature: gene Location: 288471-289094 bp Ori: SHJ31161.1 Feature: domain Description: HmoA Location: 288504-288741 bp Feature: domain Description: HmoA Location: 288504-288741 bp Feature: gene Location: 3274817-3275101 bp Ori: SHK38836.1 Feature: domain Description: HigB Location: 3274820-3275099 bp Feature: domain Description: HigB Location: 3274820-3275099 bp Feature: gene Location: 3275142-3275438 bp Ori: SHK38887.1 Feature: domain Description: antidote_HigA Location: 3275163-3275388 bp Feature: domain Description: antidote_HigA Location: 32751 63-3275388 bp Feature: gene Location: 3276465-3277796 bp Ori: SHK38924.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276756-3277419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276756-327741 9 bp Feature: domain Description: GIIM Note: maturase Location: 3277488-3277701 bp Feature: domain Description: GIIM Note: maturase Location: 3277488-3277701 bp Feature: gene Location: 3278428-3279435 bp Ori: SHK38983.1 Feature: domain Description: GT4_AviGT4-like Location: 3278434-3279424 bp Feature: domain Description: GT4_AviGT4-like Location: 3278434-3279424 bp Feature: gene Location: 3279460-3281061 bp Ori: SHK39024.1 Feature: domain Description: AmyAc_OligoGlu_like Location: 3279475-3280831 bp Feature: domain Description: AmyAc_OligoGlu_like Location: 3279475-3280831 bp Feature: domain Description: Malt_amylase_C Location: 3280831-3280966 bp Feature: domain Description: Malt_amylase_C Location: 3280831 -3280966 bp Feature: gene Location: 4570331-4571173 bp Ori: SHK85565.1 Feature: domain Description: Acetyltransf_1 Location: 4570439-4570625 bp Feature: domain Description: Acetyltransf_1 Location: 4570439-4570625 bp Feature: domain Description: Acetyltransf_18 Location: 4570784-4571150 bp Feature: domain Description: Acetyltransf_1 8 Location: 4570784-4571 1 50 bp Feature: gene Location: 4571582-4572178 bp Feature: gene Location: 4572195-4572929 bp Ori: SHK85633.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4572318-4572759 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 457231 8-4572759 bp Feature: gene Location: 4573386-4574324 bp Feature: gene Location: 4574343-4574621 bp Feature: gene Location: 6866925-6867458 bp Ori: SHL67755.1 Feature: domain Description: CAP_bacterial Location: 6867006-6867342 bp Feature: domain Description: CAP_bacterial Location: 6867006-6867342 bp Feature: gene Location: 6867768-6869681 bp Ori: SHL67790.1 Feature: domain Description: MdlB Location: 6867927-6869667 bp Feature: domain Description: MdlB Location: 6867927-6869667 bp Feature: gene Location: 6871118-6872449 bp Ori: SHL67837.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6871409-6872072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6871 409-6872072 bp Feature: domain Description: GIIM Note: maturase Location: 6872141-6872354 bp Feature: domain Description: GIIM Note: maturase Location: 68721 41 -6872354 bp Feature: gene Location: 6873739-6875226 bp Ori: SHL67881.1 Feature: domain Description: ALDH_HMSADH_HapE Location: 6873859-6875218 bp Feature: domain Description: ALDH_HMSADH_HapE Location: 6873859-687521 8 bp Feature: gene Location: 6875336-6876109 bp Ori: SHL67916.1 Feature: domain Description: MhpD Location: 6875390-6876104 bp Feature: domain Description: MhpD Location: 6875390-68761 04 bp Feature: gene Location: 7011255-7011716 bp Ori: SHL73368.1 Feature: domain Description: Lipocalin_5 Location: 7011288-7011702 bp Feature: domain Description: Lipocalin_5 Location: 701 1 288-701 1 702 bp Feature: gene Location: 7011746-7012714 bp Ori: SHL73426.1 Feature: domain Description: PRK07066 Location: 7011770-7012697 bp Feature: domain Description: PRK07066 Location: 701 1 770-701 2697 bp Feature: gene Location: 7013462-7014793 bp Ori: SHL73475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7013753-7014416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 3753-701 441 6 bp Feature: domain Description: GIIM Note: maturase Location: 7014485-7014698 bp Feature: domain Description: GIIM Note: maturase Location: 701 4485-701 4698 bp Feature: gene Location: 7015051-7015989 bp Ori: SHL73516.1 Feature: domain Description: YfdV Location: 7015054-7015981 bp Feature: domain Description: YfdV Location: 701 5054-701 5981 bp Feature: gene Location: 7017777-7019165 bp Ori: SHL73564.1 Feature: domain Description: GlcD Location: 7017891-7018566 bp Feature: domain Description: GlcD Location: 701 7891 -701 8566 bp Feature: domain Description: BBE Location: 7019055-7019151 bp Feature: domain Description: BBE Location: 701 9055-701 91 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4274 (Uncharacterized protein, contains GYD domain ), 2_5_RNA_ligase2 (pfam13563), RVT-GII, HmoA (COG2329), HigB (COG4680), antidote_HigA (TIGR02607), GIIM (pfam08388), GT4_AviGT4-like (cd03802), AmyAc_OligoGlu_like (cd11331), Malt_amylase_C (pfam16657)
Acetyltransf_1 (pfam00583), Acetyltransf_18 (pfam18014), RVT-UG11, CAP_bacterial (cd05379), MdlB (COG1132), ALDH_HMSADH_HapE (cd07115), MhpD (COG3971), Lipocalin_5 (pfam13924), PRK07066 (L-carnitine dehydrogenase), YfdV (COG0679)
GlcD (COG0277), BBE (pfam08031)