myRT

myRT report for GCA_900146115.1_281

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Seq: FROI01000019.1 (63888 bp)
Overview 1 RT 1: 26794-28946 bp Neighborhood of RT #1 [26794, 29479] HipB RVT-UG17 Feature: gene Location: 26794-27075 bp Feature: domain Description: HipB Location: 26815-27049 bp Feature: domain Description: HipB Location: 2681 5-27049 bp Feature: gene Location: 27161-27586 bp Feature: gene Location: 28115-29479 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28343-28946 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 28343-28946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: FROI01000077.1 (409726 bp)
Overview 1 RT 1: 393920-402758 bp Neighborhood of RT #1 [393920, 402787] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 393920-395134 bp Feature: domain Description: PRK10770 Location: 393932-395126 bp Feature: domain Description: PRK10770 Location: 393932 -39512 6 bp Feature: gene Location: 395193-397982 bp Feature: domain Description: LptD Location: 395388-397968 bp Feature: domain Description: LptD Location: 395388-397968 bp Feature: gene Location: 398115-399827 bp Feature: domain Description: RVT_N Location: 398172-398415 bp Feature: domain Description: RVT_N Location: 398172 -398415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398460-399096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398460-399096 bp Feature: domain Description: YkfC Location: 399306-399456 bp Feature: domain Description: YkfC Location: 399306-399456 bp Feature: domain Description: HNH Note: nucleases Location: 399633-399771 bp Feature: domain Description: HNH Note: nucleases Location: 399633-399771 bp Feature: gene Location: 401100-402116 bp Feature: domain Description: COG3178 Location: 401103-402102 bp Feature: domain Description: COG3178 Location: 401103-402 102 bp Feature: gene Location: 402113-402787 bp Feature: domain Description: NTP_transferase_like_1 Location: 402119-402758 bp Feature: domain Description: NTP_transferase_like_1 Location: 402 119-402 758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: FROI01000066.1 (1861 bp)
Overview 1 RT 1: 2-1699 bp Neighborhood of RT #1 [2, 1797] RVT-GII GIIM Feature: gene Location: 2-178 bp Feature: gene Location: 529-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-13 99 bp Feature: domain Description: GIIM Note: maturase Location: 1477-1699 bp Feature: domain Description: GIIM Note: maturase Location: 1477-1699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)