myRT

myRT report for GCA_900146835.1_356

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Seq: FRRD01000001.1 (139650 bp)
Overview 1 RT 1: 51821-60003 bp 2 RT 2: 76267-86324 bp 3 RT 3: 114462-119811 bp Neighborhood of RT #1 [51821, 60011] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76267, 86324] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HTH_3 HTH_3 Neighborhood of RT #3 [114462, 119861] INT_Rci_Hp1_C SLATT_5 RVT-UG17 FACL_FadD13-like Feature: gene Location: 51821-52837 bp Feature: domain Description: COG3178 Location: 51824-52823 bp Feature: domain Description: COG31 78 Location: 51 824-52823 bp Feature: gene Location: 53134-53268 bp Feature: gene Location: 54110-55822 bp Feature: domain Description: RVT_N Location: 54167-54410 bp Feature: domain Description: RVT_N Location: 541 67-5441 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54455-55091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54455-55091 bp Feature: domain Description: YkfC Location: 55298-55451 bp Feature: domain Description: YkfC Location: 55298-55451 bp Feature: domain Description: HNH Note: nucleases Location: 55628-55766 bp Feature: domain Description: HNH Note: nucleases Location: 55628-55766 bp Feature: gene Location: 55955-58738 bp Feature: domain Description: LptD Location: 56150-58724 bp Feature: domain Description: LptD Location: 561 50-58724 bp Feature: gene Location: 58797-60011 bp Feature: domain Description: PRK10770 Location: 58809-60003 bp Feature: domain Description: PRK1 0770 Location: 58809-60003 bp Feature: gene Location: 76267-78120 bp Feature: domain Description: PRK05658 Location: 76279-78118 bp Feature: domain Description: PRK05658 Location: 76279-781 1 8 bp Feature: gene Location: 78227-81955 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78326-78983 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78326-78983 bp Feature: domain Description: PRK09776 Location: 79196-79667 bp Feature: domain Description: PRK09776 Location: 791 96-79667 bp Feature: domain Description: PAS Location: 79715-80249 bp Feature: domain Description: PAS Location: 7971 5-80249 bp Feature: domain Description: PRK10060 Location: 80258-81905 bp Feature: domain Description: PRK1 0060 Location: 80258-81 905 bp Feature: gene Location: 83036-84721 bp Feature: domain Description: RVT_N Location: 83093-83333 bp Feature: domain Description: RVT_N Location: 83093-83333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83381-84017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83381 -8401 7 bp Feature: domain Description: GIIM Note: maturase Location: 84071-84302 bp Feature: domain Description: GIIM Note: maturase Location: 84071 -84302 bp Feature: domain Description: HNH Note: nucleases Location: 84554-84692 bp Feature: domain Description: HNH Note: nucleases Location: 84554-84692 bp Feature: gene Location: 85251-85718 bp Feature: domain Description: HTH_3 Location: 85287-85437 bp Feature: domain Description: HTH_3 Location: 85287-85437 bp Feature: domain Description: HTH_3 Location: 85620-85692 bp Feature: domain Description: HTH_3 Location: 85620-85692 bp Feature: gene Location: 85860-86324 bp Feature: gene Location: 114462-115331 bp Feature: domain Description: INT_Rci_Hp1_C Location: 114741-115200 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 1 4741 -1 1 5200 bp Feature: gene Location: 115742-116341 bp Feature: domain Description: SLATT_5 Location: 115805-116306 bp Feature: domain Description: SLATT_5 Location: 1 1 5805-1 1 6306 bp Feature: gene Location: 116341-117705 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 116569-117172 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 1 6569-1 1 71 72 bp Feature: gene Location: 117811-117999 bp Feature: gene Location: 118314-119861 bp Feature: domain Description: FACL_FadD13-like Location: 118341-119811 bp Feature: domain Description: FACL_FadD1 3-like Location: 1 1 8341 -1 1 981 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), HTH_3 (pfam01381), INT_Rci_Hp1_C (cd00796), SLATT_5 (pfam18160), RVT-UG17, FACL_FadD13-like (cd17631)