myRT

myRT report for GCA_900146845.1_357

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Seq: FRRE01000005.1 (139642 bp)
Overview 1 RT 1: 51817-59999 bp 2 RT 2: 76263-86320 bp 3 RT 3: 114458-119807 bp Neighborhood of RT #1 [51817, 60007] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76263, 86320] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HTH_3 HTH_3 Neighborhood of RT #3 [114458, 119857] INT_Rci_Hp1_C SLATT_5 RVT-UG17 FACL_FadD13-like Feature: gene Location: 51817-52833 bp Feature: domain Description: COG3178 Location: 51820-52819 bp Feature: domain Description: COG31 78 Location: 51 820-5281 9 bp Feature: gene Location: 53130-53264 bp Feature: gene Location: 54106-55818 bp Feature: domain Description: RVT_N Location: 54163-54406 bp Feature: domain Description: RVT_N Location: 541 63-54406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54451-55087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54451 -55087 bp Feature: domain Description: YkfC Location: 55294-55447 bp Feature: domain Description: YkfC Location: 55294-55447 bp Feature: domain Description: HNH Note: nucleases Location: 55624-55762 bp Feature: domain Description: HNH Note: nucleases Location: 55624-55762 bp Feature: gene Location: 55951-58734 bp Feature: domain Description: LptD Location: 56146-58720 bp Feature: domain Description: LptD Location: 561 46-58720 bp Feature: gene Location: 58793-60007 bp Feature: domain Description: PRK10770 Location: 58805-59999 bp Feature: domain Description: PRK1 0770 Location: 58805-59999 bp Feature: gene Location: 76263-78116 bp Feature: domain Description: PRK05658 Location: 76275-78114 bp Feature: domain Description: PRK05658 Location: 76275-781 1 4 bp Feature: gene Location: 78223-81951 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78322-78979 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78322-78979 bp Feature: domain Description: PRK09776 Location: 79192-79663 bp Feature: domain Description: PRK09776 Location: 791 92-79663 bp Feature: domain Description: PAS Location: 79711-80245 bp Feature: domain Description: PAS Location: 7971 1 -80245 bp Feature: domain Description: PRK10060 Location: 80254-81901 bp Feature: domain Description: PRK1 0060 Location: 80254-81 901 bp Feature: gene Location: 83032-84717 bp Feature: domain Description: RVT_N Location: 83089-83329 bp Feature: domain Description: RVT_N Location: 83089-83329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83377-84013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83377-8401 3 bp Feature: domain Description: GIIM Note: maturase Location: 84067-84298 bp Feature: domain Description: GIIM Note: maturase Location: 84067-84298 bp Feature: domain Description: HNH Note: nucleases Location: 84550-84688 bp Feature: domain Description: HNH Note: nucleases Location: 84550-84688 bp Feature: gene Location: 85247-85714 bp Feature: domain Description: HTH_3 Location: 85283-85433 bp Feature: domain Description: HTH_3 Location: 85283-85433 bp Feature: domain Description: HTH_3 Location: 85616-85688 bp Feature: domain Description: HTH_3 Location: 8561 6-85688 bp Feature: gene Location: 85856-86320 bp Feature: gene Location: 114458-115327 bp Feature: domain Description: INT_Rci_Hp1_C Location: 114737-115196 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 1 4737-1 1 51 96 bp Feature: gene Location: 115738-116337 bp Feature: domain Description: SLATT_5 Location: 115801-116302 bp Feature: domain Description: SLATT_5 Location: 1 1 5801 -1 1 6302 bp Feature: gene Location: 116337-117701 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 116565-117168 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 1 6565-1 1 71 68 bp Feature: gene Location: 117807-117995 bp Feature: gene Location: 118310-119857 bp Feature: domain Description: FACL_FadD13-like Location: 118337-119807 bp Feature: domain Description: FACL_FadD1 3-like Location: 1 1 8337-1 1 9807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), HTH_3 (pfam01381), INT_Rci_Hp1_C (cd00796), SLATT_5 (pfam18160), RVT-UG17, FACL_FadD13-like (cd17631)