myRT

myRT report for GCA_900147075.1_381

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Seq: FRSA01000026.1 (139590 bp)
Overview 1 RT 1: 19741-25009 bp 2 RT 2: 53278-63333 bp 3 RT 3: 79591-87766 bp Neighborhood of RT #1 [19741, 25140] FACL_FadD13-like RVT-UG17 SLATT_5 INT_Rci_Hp1_C Neighborhood of RT #2 [53278, 63335] HTH_3 HTH_3 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #3 [79591, 87780] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 19741-21288 bp Feature: domain Description: FACL_FadD13-like Location: 19768-21238 bp Feature: domain Description: FACL_FadD1 3-like Location: 1 9768-21 238 bp Feature: gene Location: 21603-21824 bp Feature: gene Location: 21897-23261 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 22125-22728 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 221 25-22728 bp Feature: gene Location: 23261-23800 bp Feature: domain Description: SLATT_5 Location: 23267-23765 bp Feature: domain Description: SLATT_5 Location: 23267-23765 bp Feature: gene Location: 24271-25140 bp Feature: domain Description: INT_Rci_Hp1_C Location: 24550-25009 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 24550-25009 bp Feature: gene Location: 53278-53742 bp Feature: gene Location: 53884-54351 bp Feature: domain Description: HTH_3 Location: 53920-54070 bp Feature: domain Description: HTH_3 Location: 53920-54070 bp Feature: domain Description: HTH_3 Location: 54253-54325 bp Feature: domain Description: HTH_3 Location: 54253-54325 bp Feature: gene Location: 54881-56566 bp Feature: domain Description: RVT_N Location: 54938-55178 bp Feature: domain Description: RVT_N Location: 54938-551 78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55226-55862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55226-55862 bp Feature: domain Description: GIIM Note: maturase Location: 55916-56147 bp Feature: domain Description: GIIM Note: maturase Location: 5591 6-561 47 bp Feature: domain Description: HNH Note: nucleases Location: 56399-56537 bp Feature: domain Description: HNH Note: nucleases Location: 56399-56537 bp Feature: gene Location: 57647-61375 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 57746-58403 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 57746-58403 bp Feature: domain Description: PRK09776 Location: 58616-59087 bp Feature: domain Description: PRK09776 Location: 5861 6-59087 bp Feature: domain Description: PAS Location: 59135-59669 bp Feature: domain Description: PAS Location: 591 35-59669 bp Feature: domain Description: PRK10060 Location: 59678-61325 bp Feature: domain Description: PRK1 0060 Location: 59678-61 325 bp Feature: gene Location: 61482-63335 bp Feature: domain Description: PRK05658 Location: 61494-63333 bp Feature: domain Description: PRK05658 Location: 61 494-63333 bp Feature: gene Location: 79591-80805 bp Feature: domain Description: PRK10770 Location: 79603-80797 bp Feature: domain Description: PRK1 0770 Location: 79603-80797 bp Feature: gene Location: 80864-83647 bp Feature: domain Description: LptD Location: 81059-83633 bp Feature: domain Description: LptD Location: 81 059-83633 bp Feature: gene Location: 83780-85492 bp Feature: domain Description: RVT_N Location: 83837-84080 bp Feature: domain Description: RVT_N Location: 83837-84080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84125-84758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 25-84758 bp Feature: domain Description: YkfC Location: 84971-85121 bp Feature: domain Description: YkfC Location: 84971 -851 21 bp Feature: domain Description: HNH Note: nucleases Location: 85298-85436 bp Feature: domain Description: HNH Note: nucleases Location: 85298-85436 bp Feature: gene Location: 86333-86467 bp Feature: gene Location: 86764-87780 bp Feature: domain Description: COG3178 Location: 86767-87766 bp Feature: domain Description: COG31 78 Location: 86767-87766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), RVT-UG17, SLATT_5 (pfam18160), INT_Rci_Hp1_C (cd00796), HTH_3 (pfam01381), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )