myRT

myRT report for GCA_900148245.1_LRJ08

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Seq: FRWP01001244.1 (61909 bp)
Overview 1 RT 1: 17991-26163 bp 2 RT 2: 42427-52724 bp Neighborhood of RT #1 [17991, 26171] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [42427, 52735] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 17991-19007 bp Feature: domain Description: COG3178 Location: 17994-18993 bp Feature: domain Description: COG31 78 Location: 1 7994-1 8993 bp Feature: gene Location: 19304-19438 bp Feature: gene Location: 20279-21991 bp Feature: domain Description: RVT_N Location: 20336-20579 bp Feature: domain Description: RVT_N Location: 20336-20579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20624-21257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20624-21 257 bp Feature: domain Description: YkfC Location: 21470-21620 bp Feature: domain Description: YkfC Location: 21 470-21 620 bp Feature: domain Description: HNH Note: nucleases Location: 21797-21935 bp Feature: domain Description: HNH Note: nucleases Location: 21 797-21 935 bp Feature: gene Location: 22124-24898 bp Feature: domain Description: LptD Location: 22319-24884 bp Feature: domain Description: LptD Location: 2231 9-24884 bp Feature: gene Location: 24957-26171 bp Feature: domain Description: PRK10770 Location: 24969-26163 bp Feature: domain Description: PRK1 0770 Location: 24969-261 63 bp Feature: gene Location: 42427-44280 bp Feature: domain Description: PRK05658 Location: 42439-44278 bp Feature: domain Description: PRK05658 Location: 42439-44278 bp Feature: gene Location: 44387-48124 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 44495-45152 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 44495-451 52 bp Feature: domain Description: PRK09776 Location: 45365-45836 bp Feature: domain Description: PRK09776 Location: 45365-45836 bp Feature: domain Description: PAS Location: 45893-46418 bp Feature: domain Description: PAS Location: 45893-4641 8 bp Feature: domain Description: PRK10060 Location: 46427-48074 bp Feature: domain Description: PRK1 0060 Location: 46427-48074 bp Feature: gene Location: 49205-50890 bp Feature: domain Description: RVT_N Location: 49262-49502 bp Feature: domain Description: RVT_N Location: 49262-49502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49550-50186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49550-501 86 bp Feature: domain Description: GIIM Note: maturase Location: 50240-50471 bp Feature: domain Description: GIIM Note: maturase Location: 50240-50471 bp Feature: domain Description: HNH Note: nucleases Location: 50723-50861 bp Feature: domain Description: HNH Note: nucleases Location: 50723-50861 bp Feature: gene Location: 51218-51355 bp Feature: gene Location: 51614-52735 bp Feature: domain Description: COG3177 Location: 51632-52724 bp Feature: domain Description: COG31 77 Location: 51 632-52724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: FRWP01000148.1 (3194 bp)
Overview 1 RT 1: 1-3028 bp Neighborhood of RT #1 [1, 3087] L1-EN RVT-UNC Transposase_22 Tnp_22_dsRBD Feature: gene Location: 1-2463 bp Feature: domain Description: L1-EN Location: 31-712 bp Feature: domain Description: L1-EN Location: 31-712 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1585-2242 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1585-2 2 42 bp Feature: gene Location: 2527-3087 bp Feature: domain Description: Transposase_22 Location: 2536-2827 bp Feature: domain Description: Transposase_2 2 Location: 2 536-2 82 7 bp Feature: domain Description: Tnp_22_dsRBD Location: 2836-3028 bp Feature: domain Description: Tnp_2 2 _dsRBD Location: 2 836-302 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), Transposase_22 (pfam02994), Tnp_22_dsRBD (pfam17490)

Seq: FRWP01000141.1 (24014 bp)
Overview 1 RT 1: 14564-18943 bp Neighborhood of RT #1 [14564, 18943] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 14564-15391 bp Feature: domain Description: ABC_phnC Location: 14594-15308 bp Feature: domain Description: ABC_phnC Location: 14594-153 08 bp Feature: gene Location: 15734-16375 bp Feature: domain Description: DUF772 Location: 15884-16079 bp Feature: domain Description: DUF772 Location: 15884-16079 bp Feature: gene Location: 16764-18032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16977-17634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16977-1763 4 bp Feature: domain Description: GIIM Note: maturase Location: 17712-17934 bp Feature: domain Description: GIIM Note: maturase Location: 17712-1793 4 bp Feature: gene Location: 18182-18580 bp Feature: gene Location: 18764-18943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)