myRT

myRT report for GCA_900155395.1_PRJEB18752

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Seq: LT699717.1 (199974 bp)
Overview 1 RT 1: 92945-97755 bp 2 RT 2: 133466-140050 bp Neighborhood of RT #1 [92945, 97856] agaS_fam RVT-GII GIIM Eis Neighborhood of RT #2 [133466, 140178] BglG PTS_EIIA_2 arb RVT-GII GIIM Met_dep_hydrolase_A Feature: gene Location: 92945-94123 bp Feature: domain Description: agaS_fam Location: 92987-94112 bp Feature: domain Description: agaS_fam Location: 92987-941 1 2 bp Feature: gene Location: 94318-94941 bp Feature: gene Location: 95031-96386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95295-95910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95295-9591 0 bp Feature: domain Description: GIIM Note: maturase Location: 95967-96177 bp Feature: domain Description: GIIM Note: maturase Location: 95967-961 77 bp Feature: gene Location: 96544-96840 bp Feature: gene Location: 96948-97856 bp Feature: domain Description: Eis Location: 97068-97755 bp Feature: domain Description: Eis Location: 97068-97755 bp Feature: gene Location: 133466-135388 bp Feature: domain Description: BglG Location: 133472-134786 bp Feature: domain Description: BglG Location: 1 33472-1 34786 bp Feature: domain Description: PTS_EIIA_2 Location: 134966-135371 bp Feature: domain Description: PTS_EIIA_2 Location: 1 34966-1 35371 bp Feature: gene Location: 135402-136850 bp Feature: domain Description: arb Location: 135405-136845 bp Feature: domain Description: arb Location: 1 35405-1 36845 bp Feature: gene Location: 136969-138285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137188-137806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 88-1 37806 bp Feature: domain Description: GIIM Note: maturase Location: 137860-138070 bp Feature: domain Description: GIIM Note: maturase Location: 1 37860-1 38070 bp Feature: gene Location: 138584-138835 bp Feature: gene Location: 138853-140178 bp Feature: domain Description: Met_dep_hydrolase_A Location: 139060-140050 bp Feature: domain Description: Met_dep_hydrolase_A Location: 1 39060-1 40050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT agaS_fam (TIGR02815), RVT-GII, GIIM (pfam08388), Eis (COG4552), BglG (COG3711), PTS_EIIA_2 (pfam00359), arb (PRK09593), Met_dep_hydrolase_A (cd01299)

Seq: LT699727.1 (429577 bp)
Overview 1 RT 1: 136577-142494 bp 2 RT 2: 228648-234305 bp Neighborhood of RT #1 [136577, 142505] RVT-UG7 C_GCAxxG_C_C Neighborhood of RT #2 [228648, 234559] NfsA_FRP YncA RVT-GII GIIM P-type_ATPase Feature: gene Location: 136577-137362 bp Feature: gene Location: 137362-138915 bp Feature: gene Location: 139367-140989 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 139793-140204 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 139793-1402 04 bp Feature: gene Location: 141335-141589 bp Feature: gene Location: 142116-142505 bp Feature: domain Description: C_GCAxxG_C_C Location: 142158-142494 bp Feature: domain Description: C_GCAxxG_C_C Location: 142 158-142 494 bp Feature: gene Location: 228648-229397 bp Feature: domain Description: NfsA_FRP Location: 228660-229260 bp Feature: domain Description: NfsA_FRP Location: 2 2 8660-2 2 92 60 bp Feature: gene Location: 229416-229988 bp Feature: domain Description: YncA Location: 229419-229902 bp Feature: domain Description: YncA Location: 2 2 9419-2 2 9902 bp Feature: gene Location: 230174-231529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230438-231056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 30438-2 31056 bp Feature: domain Description: GIIM Note: maturase Location: 231110-231320 bp Feature: domain Description: GIIM Note: maturase Location: 2 31110-2 3132 0 bp Feature: gene Location: 231687-231983 bp Feature: gene Location: 232145-234559 bp Feature: domain Description: P-type_ATPase Location: 232193-234305 bp Feature: domain Description: P-type_ATPase Location: 2 32 193-2 34305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, C_GCAxxG_C_C (TIGR01909), NfsA_FRP, YncA (COG1247), RVT-GII, GIIM (pfam08388), P-type_ATPase (cd07539)

Seq: LT699725.1 (188961 bp)
Overview 1 RT 1: 96567-101147 bp Neighborhood of RT #1 [96567, 101194] PRK01259 RVT-GII GIIM CE4_SmPgdA_like Feature: gene Location: 96567-97517 bp Feature: domain Description: PRK01259 Location: 96582-97497 bp Feature: domain Description: PRK01259 Location: 96582-97497 bp Feature: gene Location: 97613-97804 bp Feature: gene Location: 98078-99433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98342-98960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983 42-98960 bp Feature: domain Description: GIIM Note: maturase Location: 99014-99224 bp Feature: domain Description: GIIM Note: maturase Location: 99014-99224 bp Feature: gene Location: 99548-100333 bp Feature: gene Location: 100427-101194 bp Feature: domain Description: CE4_SmPgdA_like Location: 100571-101147 bp Feature: domain Description: CE4_SmPgdA_like Location: 100571-101147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01259 (ribose-phosphate diphosphokinase), RVT-GII, GIIM (pfam08388), CE4_SmPgdA_like (cd10944)

Seq: LT699728.1 (435046 bp)
Overview 1 RT 1: 5104-9778 bp 2 RT 2: 196006-200248 bp 3 RT 3: 309327-315635 bp Neighborhood of RT #1 [5104, 9792] YitT Hydrolase_3 RVT-GII GIIM DapA Neighborhood of RT #2 [196006, 200265] prsA Hit RVT-GII GIIM CCB1 CCB1 Neighborhood of RT #3 [309327, 315649] mycofact_OYE_2 Ntn_PVA RVT-GII GIIM AzgA Feature: gene Location: 5104-5997 bp Feature: domain Description: YitT Location: 5149-5980 bp Feature: domain Description: YitT Location: 514 9-5980 bp Feature: gene Location: 6043-6894 bp Feature: domain Description: Hydrolase_3 Location: 6124-6877 bp Feature: domain Description: Hydrolase_3 Location: 6124 -6877 bp Feature: gene Location: 7033-8388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7297-7915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7297-7915 bp Feature: domain Description: GIIM Note: maturase Location: 7969-8179 bp Feature: domain Description: GIIM Note: maturase Location: 7969-8179 bp Feature: gene Location: 8662-8898 bp Feature: gene Location: 8905-9792 bp Feature: domain Description: DapA Location: 8908-9778 bp Feature: domain Description: DapA Location: 8908-9778 bp Feature: gene Location: 196006-196941 bp Feature: domain Description: prsA Location: 196021-196855 bp Feature: domain Description: prsA Location: 196021-196855 bp Feature: gene Location: 197030-197422 bp Feature: domain Description: Hit Location: 197033-197402 bp Feature: domain Description: Hit Location: 197033-1974 02 bp Feature: gene Location: 197512-198867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197776-198391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197776-198391 bp Feature: domain Description: GIIM Note: maturase Location: 198448-198658 bp Feature: domain Description: GIIM Note: maturase Location: 1984 4 8-198658 bp Feature: gene Location: 199025-199321 bp Feature: gene Location: 199378-200265 bp Feature: domain Description: CCB1 Location: 199447-199642 bp Feature: domain Description: CCB1 Location: 1994 4 7-19964 2 bp Feature: domain Description: CCB1 Location: 200143-200248 bp Feature: domain Description: CCB1 Location: 20014 3-20024 8 bp Feature: gene Location: 309327-311267 bp Feature: domain Description: mycofact_OYE_2 Location: 309342-311259 bp Feature: domain Description: mycofact_OYE_2 Location: 30934 2-311259 bp Feature: gene Location: 311348-312334 bp Feature: domain Description: Ntn_PVA Location: 311360-312245 bp Feature: domain Description: Ntn_PVA Location: 311360-31224 5 bp Feature: gene Location: 312419-313774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312683-313301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312683-313301 bp Feature: domain Description: GIIM Note: maturase Location: 313355-313565 bp Feature: domain Description: GIIM Note: maturase Location: 313355-313565 bp Feature: gene Location: 313932-314228 bp Feature: gene Location: 314294-315649 bp Feature: domain Description: AzgA Location: 314297-315635 bp Feature: domain Description: AzgA Location: 314 297-315635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YitT (COG1284), Hydrolase_3 (pfam08282), RVT-GII, GIIM (pfam08388), DapA (COG0329), prsA (PRK04405), Hit (COG0537), CCB1 (pfam12046), mycofact_OYE_2 (TIGR03997), Ntn_PVA (cd00542)
AzgA (COG2252)