myRT

myRT report for GCA_900159515.1_8489_1_75

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Seq: FTZT01000046.1 (32731 bp)
Overview 1 RT 1: 497-4276 bp Neighborhood of RT #1 [497, 4359] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Feature: gene Location: 497-718 bp Feature: gene Location: 994-1776 bp Feature: domain Description: DDE_Tnp_1 Location: 1000-1708 bp Feature: domain Description: DDE_Tnp_1 Location: 1 000-1 708 bp Feature: gene Location: 1802-2005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1910-2000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 0-2000 bp Feature: gene Location: 2066-2422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2075-2396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2075-2396 bp Feature: gene Location: 2516-3184 bp Feature: domain Description: HTH_23 Location: 2624-2711 bp Feature: domain Description: HTH_23 Location: 2624-271 1 bp Feature: domain Description: InsE Location: 2840-3035 bp Feature: domain Description: InsE Location: 2840-3035 bp Feature: gene Location: 3328-4359 bp Feature: domain Description: HTH_23 Location: 3406-3547 bp Feature: domain Description: HTH_23 Location: 3406-3547 bp Feature: domain Description: HTH_33 Location: 3652-3799 bp Feature: domain Description: HTH_33 Location: 3652-3799 bp Feature: domain Description: DDE_3 Location: 3859-4276 bp Feature: domain Description: DDE_3 Location: 3859-4276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: FTZT01000203.1 (5930 bp)
Overview 1 RT 1: 540-2510 bp Neighborhood of RT #1 [540, 2545] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 540-1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741-12 03 bp Feature: gene Location: 1244-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1250-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 50-1394 bp Feature: domain Description: GIIM Note: maturase Location: 1472-1694 bp Feature: domain Description: GIIM Note: maturase Location: 1472 -1694 bp Feature: gene Location: 1887-2033 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1899-2010 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1899-2 010 bp Feature: gene Location: 2060-2545 bp Feature: domain Description: COG3547 Location: 2078-2510 bp Feature: domain Description: COG3547 Location: 2 078-2 510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: FTZT01000160.1 (8606 bp)
Overview 1 RT 1: 3-3350 bp Neighborhood of RT #1 [3, 3352] PHA02517 RVT-GII GIIM PHA02517 PRK13734 Feature: gene Location: 3-278 bp Feature: domain Description: PHA02517 Location: 6-213 bp Feature: domain Description: PHA02517 Location: 6-213 bp Feature: gene Location: 870-2393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143-1875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143 -1875 bp Feature: domain Description: GIIM Note: maturase Location: 1950-2148 bp Feature: domain Description: GIIM Note: maturase Location: 1950-2148 bp Feature: gene Location: 2570-2956 bp Feature: domain Description: PHA02517 Location: 2573-2954 bp Feature: domain Description: PHA02517 Location: 2573 -2954 bp Feature: gene Location: 3071-3352 bp Feature: domain Description: PRK13734 Location: 3074-3350 bp Feature: domain Description: PRK13 73 4 Location: 3 074-3 3 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK13734 (conjugal transfer pilin subunit TraA; Provisional)

Seq: FTZT01000211.1 (5275 bp)
Overview 1 RT 1: 2295-5060 bp Neighborhood of RT #1 [2295, 5077] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2295-2537 bp Feature: gene Location: 2709-2864 bp Feature: gene Location: 2890-3417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2896-3040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2896-304 0 bp Feature: domain Description: GIIM Note: maturase Location: 3124-3340 bp Feature: domain Description: GIIM Note: maturase Location: 3124 -334 0 bp Feature: gene Location: 3427-3699 bp Feature: gene Location: 3716-4843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4016-4673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 016-4 673 bp Feature: gene Location: 4856-5077 bp Feature: domain Description: Tra5 Location: 4868-5060 bp Feature: domain Description: Tra5 Location: 4 868-5060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: FTZT01000009.1 (60399 bp)
Overview 1 RT 1: 91-3981 bp Neighborhood of RT #1 [91, 3983] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 91-594 bp Feature: gene Location: 813-1022 bp Feature: gene Location: 1157-3058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-2255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-225 5 bp Feature: domain Description: Intron_maturas2 Location: 2369-2627 bp Feature: domain Description: Intron_maturas2 Location: 2369-2627 bp Feature: domain Description: HNHc Note: nucleases Location: 2801-2963 bp Feature: domain Description: HNHc Note: nucleases Location: 2801-2963 bp Feature: gene Location: 3253-3693 bp Feature: domain Description: PRK13732 Location: 3259-3691 bp Feature: domain Description: PRK13732 Location: 325 9-3691 bp Feature: gene Location: 3747-3983 bp Feature: domain Description: DUF905 Location: 3780-3981 bp Feature: domain Description: DUF905 Location: 3780-3981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)