myRT

myRT report for GCA_900159575.1_8489_1_81

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Seq: FUAA01000215.1 (5267 bp)
Overview 1 RT 1: 2299-5064 bp Neighborhood of RT #1 [2299, 5081] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2299-2541 bp Feature: gene Location: 2713-2868 bp Feature: gene Location: 2894-3421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2900-3044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2900-3044 bp Feature: domain Description: GIIM Note: maturase Location: 3128-3344 bp Feature: domain Description: GIIM Note: maturase Location: 31 28-3344 bp Feature: gene Location: 3431-3703 bp Feature: gene Location: 3720-4847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4020-4677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4020-4677 bp Feature: gene Location: 4860-5081 bp Feature: domain Description: Tra5 Location: 4872-5064 bp Feature: domain Description: Tra5 Location: 4872-5064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: FUAA01000207.1 (5890 bp)
Overview 1 RT 1: 522-2492 bp Neighborhood of RT #1 [522, 2527] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 522-1211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723-1185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 3-1185 bp Feature: gene Location: 1226-1753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1232-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 32 -1376 bp Feature: domain Description: GIIM Note: maturase Location: 1454-1676 bp Feature: domain Description: GIIM Note: maturase Location: 1454-1676 bp Feature: gene Location: 1869-2015 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1881-1992 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1881-1992 bp Feature: gene Location: 2042-2527 bp Feature: domain Description: COG3547 Location: 2060-2492 bp Feature: domain Description: COG3547 Location: 2 060-2 492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: FUAA01000272.1 (3350 bp)
Overview 1 RT 1: 518-3348 bp Neighborhood of RT #1 [518, 3348] DDE_Tnp_1 RVT-GII RVT-GII InsE Feature: gene Location: 518-739 bp Feature: gene Location: 1015-1797 bp Feature: domain Description: DDE_Tnp_1 Location: 1021-1729 bp Feature: domain Description: DDE_Tnp_1 Location: 1021-1729 bp Feature: gene Location: 1823-2026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931-2021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 1-2021 bp Feature: gene Location: 2087-2443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2096-2417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2096-2417 bp Feature: gene Location: 2537-3040 bp Feature: domain Description: InsE Location: 2696-2894 bp Feature: domain Description: InsE Location: 2696-2894 bp Feature: gene Location: 3082-3348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, InsE (COG2963)

Seq: FUAA01000262.1 (3747 bp)
Overview 1 RT 1: 574-3591 bp Neighborhood of RT #1 [574, 3591] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 574-996 bp Feature: domain Description: DUF1380 Location: 577-871 bp Feature: domain Description: DUF1380 Location: 577-871 bp Feature: gene Location: 1048-1389 bp Feature: gene Location: 1462-3129 bp Feature: domain Description: RVT_N Location: 1510-1747 bp Feature: domain Description: RVT_N Location: 1510-174 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1798-2440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1798-24 4 0 bp Feature: domain Description: GIIM Note: maturase Location: 2491-2725 bp Feature: domain Description: GIIM Note: maturase Location: 24 91-2725 bp Feature: domain Description: HNHc Note: nucleases Location: 2935-3094 bp Feature: domain Description: HNHc Note: nucleases Location: 2935-3094 bp Feature: gene Location: 3409-3591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: FUAA01000297.1 (2450 bp)
Overview 1 RT 1: 2-2009 bp Neighborhood of RT #1 [2, 2254] PHA02517 RVT-GII GIIM Feature: gene Location: 2-139 bp Feature: domain Description: PHA02517 Location: 8-74 bp Feature: domain Description: PHA025 17 Location: 8-74 bp Feature: gene Location: 731-2254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2009 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)