myRT

myRT report for GCA_900159615.1_8489_1_85

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Seq: FUAE01000263.1 (3382 bp)
Overview 1 RT 1: 526-3049 bp Neighborhood of RT #1 [526, 3198] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 526-747 bp Feature: gene Location: 1023-1805 bp Feature: domain Description: DDE_Tnp_1 Location: 1029-1737 bp Feature: domain Description: DDE_Tnp_1 Location: 1 029-1 737 bp Feature: gene Location: 1831-2034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 939-2029 bp Feature: gene Location: 2095-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 04-2425 bp Feature: gene Location: 2545-3198 bp Feature: domain Description: HTH_23 Location: 2638-2725 bp Feature: domain Description: HTH_23 Location: 2638-2725 bp Feature: domain Description: InsE Location: 2854-3049 bp Feature: domain Description: InsE Location: 2854-3049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: FUAE01000213.1 (5348 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 199-420 bp Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 2 11-403 bp Feature: gene Location: 433-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: gene Location: 1859-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1865-2009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1865-2 009 bp Feature: domain Description: GIIM Note: maturase Location: 2093-2309 bp Feature: domain Description: GIIM Note: maturase Location: 2 093-2 309 bp Feature: gene Location: 2739-2981 bp Feature: gene Location: 2893-4512 bp Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2 908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: FUAE01000143.1 (11202 bp)
Overview 1 RT 1: 3-3378 bp Neighborhood of RT #1 [3, 3380] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3-278 bp Feature: domain Description: PHA02517 Location: 6-213 bp Feature: domain Description: PHA02517 Location: 6-213 bp Feature: gene Location: 870-2393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143-1875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143 -1875 bp Feature: domain Description: GIIM Note: maturase Location: 1950-2148 bp Feature: domain Description: GIIM Note: maturase Location: 1950-2148 bp Feature: gene Location: 2570-2956 bp Feature: domain Description: PHA02517 Location: 2573-2954 bp Feature: domain Description: PHA02517 Location: 2573 -2954 bp Feature: gene Location: 3054-3380 bp Feature: domain Description: InsE Location: 3057-3378 bp Feature: domain Description: InsE Location: 3 057-3 3 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: FUAE01000203.1 (6066 bp)
Overview 1 RT 1: 3500-5479 bp Neighborhood of RT #1 [3500, 5505] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3500-3985 bp Feature: domain Description: COG3547 Location: 3518-3950 bp Feature: domain Description: COG354 7 Location: 3518-3950 bp Feature: gene Location: 4081-4248 bp Feature: gene Location: 4274-4801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4280-4424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 280-4 4 24 bp Feature: domain Description: GIIM Note: maturase Location: 4502-4724 bp Feature: domain Description: GIIM Note: maturase Location: 4 502-4 724 bp Feature: gene Location: 4816-5505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5017-5479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5017-54 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)