myRT

myRT report for GCA_900159635.1_8489_1_88

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Seq: FUAD01000211.1 (5386 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 199-420 bp Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 21 1 -403 bp Feature: gene Location: 433-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1 390 bp Feature: gene Location: 1859-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1865-2009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 865-2009 bp Feature: domain Description: GIIM Note: maturase Location: 2093-2309 bp Feature: domain Description: GIIM Note: maturase Location: 2093-2309 bp Feature: gene Location: 2739-2981 bp Feature: gene Location: 2893-4512 bp Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2908-451 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: FUAD01000278.1 (2782 bp)
Overview 1 RT 1: 1-2715 bp Neighborhood of RT #1 [1, 2780] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-273 bp Feature: domain Description: PHA02517 Location: 4-274 bp Feature: domain Description: PHA02 517 Location: 4-2 74 bp Feature: gene Location: 390-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663-1395 bp Feature: domain Description: GIIM Note: maturase Location: 1470-1668 bp Feature: domain Description: GIIM Note: maturase Location: 1470-1668 bp Feature: gene Location: 2505-2780 bp Feature: domain Description: PHA02517 Location: 2508-2715 bp Feature: domain Description: PHA02 517 Location: 2 508-2 715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: FUAD01000258.1 (3378 bp)
Overview 1 RT 1: 526-3049 bp Neighborhood of RT #1 [526, 3198] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 526-747 bp Feature: gene Location: 1023-1805 bp Feature: domain Description: DDE_Tnp_1 Location: 1029-1737 bp Feature: domain Description: DDE_Tnp_1 Location: 1029-173 7 bp Feature: gene Location: 1831-2034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 9-2029 bp Feature: gene Location: 2095-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104-2425 bp Feature: gene Location: 2545-3198 bp Feature: domain Description: HTH_23 Location: 2638-2725 bp Feature: domain Description: HTH_23 Location: 263 8-2725 bp Feature: domain Description: InsE Location: 2854-3049 bp Feature: domain Description: InsE Location: 2854-3 049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: FUAD01000202.1 (5954 bp)
Overview 1 RT 1: 3386-5365 bp Neighborhood of RT #1 [3386, 5391] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG354 7 Location: 34 04 -3836 bp Feature: gene Location: 3967-4134 bp Feature: gene Location: 4160-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 166-4 310 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4 388-4 610 bp Feature: gene Location: 4702-5391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)