myRT

myRT report for GCA_900159835.1_8403_8_13

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Seq: FUBA01000096.1 (21737 bp)
Overview 1 RT 1: 187-3754 bp Neighborhood of RT #1 [187, 3754] Tra5 RVT-GII RVT-GII GIIM IpaB_EvcA Feature: gene Location: 187-408 bp Feature: domain Description: Tra5 Location: 199-391 bp Feature: domain Description: Tra5 Location: 1 99-391 bp Feature: gene Location: 421-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721 -1 378 bp Feature: gene Location: 1847-2374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853-1997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 853-1 997 bp Feature: domain Description: GIIM Note: maturase Location: 2081-2297 bp Feature: domain Description: GIIM Note: maturase Location: 2081 -2297 bp Feature: gene Location: 2841-3506 bp Feature: domain Description: IpaB_EvcA Location: 3033-3462 bp Feature: domain Description: IpaB_EvcA Location: 3033-3462 bp Feature: gene Location: 3566-3754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), IpaB_EvcA (pfam03278)

Seq: FUBA01000181.1 (11776 bp)
Overview 1 RT 1: 9266-11236 bp Neighborhood of RT #1 [9266, 11271] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 9266-9751 bp Feature: domain Description: COG3547 Location: 9284-9716 bp Feature: domain Description: COG3547 Location: 92 84-9716 bp Feature: gene Location: 9847-10014 bp Feature: gene Location: 10040-10567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10046-10190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10046-10190 bp Feature: domain Description: GIIM Note: maturase Location: 10268-10490 bp Feature: domain Description: GIIM Note: maturase Location: 102 68-10490 bp Feature: gene Location: 10582-11271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10783-11236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10783-112 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: FUBA01000256.1 (3378 bp)
Overview 1 RT 1: 518-3041 bp Neighborhood of RT #1 [518, 3190] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 518-739 bp Feature: gene Location: 1015-1797 bp Feature: domain Description: DDE_Tnp_1 Location: 1021-1729 bp Feature: domain Description: DDE_Tnp_1 Location: 1021-1729 bp Feature: gene Location: 1823-2026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931-2021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 1-2021 bp Feature: gene Location: 2087-2443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2096-2417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2096-2417 bp Feature: gene Location: 2537-3190 bp Feature: domain Description: HTH_23 Location: 2630-2717 bp Feature: domain Description: HTH_23 Location: 263 0-2717 bp Feature: domain Description: InsE Location: 2846-3041 bp Feature: domain Description: InsE Location: 2846-3 041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: FUBA01000016.1 (46725 bp)
Overview 1 RT 1: 36859-44896 bp Neighborhood of RT #1 [36859, 45015] prfC SLATT_5 RVT-UG17 Caudo_TAP phage_tail_N Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 36859-38445 bp Feature: domain Description: prfC Location: 36877-38443 bp Feature: domain Description: prfC Location: 36877-384 4 3 bp Feature: gene Location: 38976-39680 bp Feature: domain Description: SLATT_5 Location: 39138-39648 bp Feature: domain Description: SLATT_5 Location: 39138-3964 8 bp Feature: gene Location: 39658-41028 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 39886-40492 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 39886-4 04 92 bp Feature: gene Location: 41141-41725 bp Feature: domain Description: Caudo_TAP Location: 41357-41714 bp Feature: domain Description: Caudo_TAP Location: 4 1357-4 1714 bp Feature: gene Location: 41725-45015 bp Feature: domain Description: phage_tail_N Location: 41728-42127 bp Feature: domain Description: phage_tail_N Location: 4 1728-4 2127 bp Feature: domain Description: Collar Location: 44323-44461 bp Feature: domain Description: Collar Location: 4 4 323-4 4 4 61 bp Feature: domain Description: Phage_fiber Location: 44512-44551 bp Feature: domain Description: Phage_fiber Location: 4 4 512-4 4 551 bp Feature: domain Description: Phage_fiber Location: 44608-44647 bp Feature: domain Description: Phage_fiber Location: 4 4 608-4 4 64 7 bp Feature: domain Description: Phage_fiber Location: 44821-44857 bp Feature: domain Description: Phage_fiber Location: 4 4 821-4 4 857 bp Feature: domain Description: Phage_fiber Location: 44863-44896 bp Feature: domain Description: Phage_fiber Location: 4 4 863-4 4 896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), phage_tail_N (pfam08400), Collar (pfam07484), Phage_fiber (pfam03335)