myRT

myRT report for GCA_900160405.1_8403_8_71

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Seq: FUDG01000187.1 (5923 bp)
Overview 1 RT 1: 519-2489 bp Neighborhood of RT #1 [519, 2524] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 519-1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 720-1182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 720-1 1 82 bp Feature: gene Location: 1223-1750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1229-1373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 229-1 373 bp Feature: domain Description: GIIM Note: maturase Location: 1451-1673 bp Feature: domain Description: GIIM Note: maturase Location: 1 451 -1 673 bp Feature: gene Location: 1866-2012 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1878-1989 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 878-1 989 bp Feature: gene Location: 2039-2524 bp Feature: domain Description: COG3547 Location: 2057-2489 bp Feature: domain Description: COG3547 Location: 2057-2489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: FUDG01000244.1 (3340 bp)
Overview 1 RT 1: 526-3049 bp Neighborhood of RT #1 [526, 3198] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 526-747 bp Feature: gene Location: 1023-1805 bp Feature: domain Description: DDE_Tnp_1 Location: 1029-1737 bp Feature: domain Description: DDE_Tnp_1 Location: 102 9-1737 bp Feature: gene Location: 1831-2034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2 02 9 bp Feature: gene Location: 2095-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 104-2 42 5 bp Feature: gene Location: 2545-3198 bp Feature: domain Description: HTH_23 Location: 2638-2725 bp Feature: domain Description: HTH_2 3 Location: 2 638-2 72 5 bp Feature: domain Description: InsE Location: 2854-3049 bp Feature: domain Description: InsE Location: 2 854-3049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: FUDG01000264.1 (2663 bp)
Overview 1 RT 1: 187-2297 bp Neighborhood of RT #1 [187, 2374] Tra5 RVT-GII RVT-GII GIIM Feature: gene Location: 187-408 bp Feature: domain Description: Tra5 Location: 199-391 bp Feature: domain Description: Tra5 Location: 199-3 91 bp Feature: gene Location: 421-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-13 78 bp Feature: gene Location: 1847-2374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853-1997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853 -1997 bp Feature: domain Description: GIIM Note: maturase Location: 2081-2297 bp Feature: domain Description: GIIM Note: maturase Location: 2081-2297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: FUDG01000004.1 (86025 bp)
Overview 1 RT 1: 77421-81022 bp Neighborhood of RT #1 [77421, 81022] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 77421-77843 bp Feature: domain Description: DUF1380 Location: 77424-77721 bp Feature: domain Description: DUF1380 Location: 774 24 -77721 bp Feature: gene Location: 77895-78236 bp Feature: gene Location: 78309-79976 bp Feature: domain Description: RVT_N Location: 78357-78594 bp Feature: domain Description: RVT_N Location: 78357-78594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78645-79287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7864 5-79287 bp Feature: domain Description: GIIM Note: maturase Location: 79338-79572 bp Feature: domain Description: GIIM Note: maturase Location: 79338-79572 bp Feature: domain Description: HNHc Note: nucleases Location: 79782-79941 bp Feature: domain Description: HNHc Note: nucleases Location: 79782-7994 1 bp Feature: gene Location: 80256-80438 bp Feature: gene Location: 80690-81022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)