myRT

myRT report for GCA_900160515.1_8403_8_83

Download annotations/find similar RTs

Seq: FUDR01000265.1 (2757 bp)
Overview 1 RT 1: 420-2461 bp Neighborhood of RT #1 [420, 2610] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 420-1202 bp Feature: domain Description: DDE_Tnp_1 Location: 426-1134 bp Feature: domain Description: DDE_Tnp_1 Location: 426-1 1 34 bp Feature: gene Location: 1228-1431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1336-1426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 336-1 426 bp Feature: gene Location: 1492-1848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1501-1822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 501 -1 822 bp Feature: gene Location: 1942-2610 bp Feature: domain Description: HTH_23 Location: 2050-2137 bp Feature: domain Description: HTH_23 Location: 2050-21 37 bp Feature: domain Description: InsE Location: 2266-2461 bp Feature: domain Description: InsE Location: 2266-2461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: FUDR01000200.1 (5388 bp)
Overview 1 RT 1: 523-2493 bp Neighborhood of RT #1 [523, 2528] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 523-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 4-1186 bp Feature: gene Location: 1227-1754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 33-1377 bp Feature: domain Description: GIIM Note: maturase Location: 1455-1677 bp Feature: domain Description: GIIM Note: maturase Location: 1455-1677 bp Feature: gene Location: 1870-2016 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1882-1993 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1882 -1993 bp Feature: gene Location: 2043-2528 bp Feature: domain Description: COG3547 Location: 2061-2493 bp Feature: domain Description: COG3547 Location: 2 061-2 493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: FUDR01000206.1 (4736 bp)
Overview 1 RT 1: 113-4190 bp Neighborhood of RT #1 [113, 4192] RVT-GII RVT-GII GIIM ushA Feature: gene Location: 113-1240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 -1070 bp Feature: gene Location: 1539-2066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1545-1689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1545-1689 bp Feature: domain Description: GIIM Note: maturase Location: 1773-1989 bp Feature: domain Description: GIIM Note: maturase Location: 1773 -1989 bp Feature: gene Location: 2419-2661 bp Feature: gene Location: 2573-4192 bp Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: FUDR01000092.1 (16761 bp)
Overview 1 RT 1: 8669-12034 bp Neighborhood of RT #1 [8669, 12099] GrsT PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 8669-8950 bp Feature: domain Description: GrsT Location: 8672-8930 bp Feature: domain Description: GrsT Location: 8672-8930 bp Feature: gene Location: 8996-9442 bp Feature: domain Description: PHA02517 Location: 8999-9440 bp Feature: domain Description: PHA02517 Location: 8999-94 4 0 bp Feature: gene Location: 9559-11082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9832-10564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9832-10564 bp Feature: domain Description: GIIM Note: maturase Location: 10639-10837 bp Feature: domain Description: GIIM Note: maturase Location: 10639-10837 bp Feature: gene Location: 11036-11461 bp Feature: gene Location: 11674-12099 bp Feature: domain Description: PHA02517 Location: 11698-12034 bp Feature: domain Description: PHA02517 Location: 11698-12034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GrsT (COG3208), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)