myRT

myRT report for GCA_900160545.1_8403_8_87

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Seq: FUDU01000190.1 (5813 bp)
Overview 1 RT 1: 3320-5299 bp Neighborhood of RT #1 [3320, 5325] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3320-3805 bp Feature: domain Description: COG3547 Location: 3338-3770 bp Feature: domain Description: COG3547 Location: 3338-3770 bp Feature: gene Location: 3901-4068 bp Feature: gene Location: 4094-4621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4100-4244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 00-4244 bp Feature: domain Description: GIIM Note: maturase Location: 4322-4544 bp Feature: domain Description: GIIM Note: maturase Location: 4322-4544 bp Feature: gene Location: 4636-5325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4837-5299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4837-5299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: FUDU01000195.1 (5248 bp)
Overview 1 RT 1: 187-4498 bp Neighborhood of RT #1 [187, 4500] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 187-408 bp Feature: domain Description: Tra5 Location: 199-391 bp Feature: domain Description: Tra5 Location: 199-391 bp Feature: gene Location: 421-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 1-1378 bp Feature: gene Location: 1847-2374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853-1997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853-1997 bp Feature: domain Description: GIIM Note: maturase Location: 2081-2297 bp Feature: domain Description: GIIM Note: maturase Location: 2 081-2 2 97 bp Feature: gene Location: 2727-2969 bp Feature: gene Location: 2881-4500 bp Feature: domain Description: ushA Location: 2896-4498 bp Feature: domain Description: ushA Location: 2 896-4498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: FUDU01000261.1 (2728 bp)
Overview 1 RT 1: 3-2436 bp Neighborhood of RT #1 [3, 2585] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 3-134 bp Feature: gene Location: 410-1192 bp Feature: domain Description: DDE_Tnp_1 Location: 416-1124 bp Feature: domain Description: DDE_Tnp_1 Location: 416-1124 bp Feature: gene Location: 1218-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1326-1416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 26-1416 bp Feature: gene Location: 1482-1838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1491-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1491-1812 bp Feature: gene Location: 1932-2585 bp Feature: domain Description: HTH_23 Location: 2025-2112 bp Feature: domain Description: HTH_23 Location: 2025-2112 bp Feature: domain Description: InsE Location: 2241-2436 bp Feature: domain Description: InsE Location: 2241-243 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)