myRT

myRT report for GCA_900166595.1_PRJEB19411

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Seq: LT745763.1 (4199370 bp)
Overview 1 RT 1: 575020-579902 bp 2 RT 2: 762478-768862 bp 3 RT 3: 1058526-1063827 bp 4 RT 4: 1204429-1209882 bp 5 RT 5: 2013787-2019711 bp 6 RT 6: 3316010-3321365 bp 7 RT 7: 3440120-3443363 bp 8 RT 8: 3537239-3544214 bp 9 RT 9: 3633262-3639749 bp 10 RT 10: 4085976-4092986 bp 11 RT 11: 4095714-4103000 bp 12 RT 12: 4177094-4184412 bp Neighborhood of RT #1 [575020, 579910] DUF961 FtsK RVT-GII GIIM FtsK NicK Neighborhood of RT #2 [762478, 768882] Tar DUF1664 DUF1664 RVT-GII GIIM ribE PRK09311 Neighborhood of RT #3 [1058526, 1063835] NAAAR RVT-GII GIIM YbjL Neighborhood of RT #4 [1204429, 1209887] YhdB spore_YhcN_YlaJ RVT-GII GIIM M20_dipept_like PRK06924 Neighborhood of RT #5 [2013787, 2019830] DUF4430 ECF-ribofla_trS RVT-GII GIIM YpbB RecQ RecQ_Zn_bind Neighborhood of RT #6 [3316010, 3321379] ectoine_ehuA YjzC RVT-GII GIIM murB DUF915 Neighborhood of RT #7 [3440120, 3443363] BaeS OmpR RVT-GII RimI Neighborhood of RT #8 [3537239, 3544214] ileS GIIM RVT-GII Neighborhood of RT #9 [3633262, 3639793] GT_WecA_like GDPD_TtGDE_like RVT-GII GIIM PotE DUF1572 Neighborhood of RT #10 [4085976, 4093285] ZntA COG3666 DDE_Tnp_1_6 RVT-GII GIIM DEDD_Tnp_IS110 Neighborhood of RT #11 [4095714, 4103000] HNHc RVT-GII YktD RVT-GII Neighborhood of RT #12 [4177094, 4184432] cysS CysE RVT-GII GIIM gltX COG4956 Feature: gene Location: 575020-575412 bp Feature: domain Description: DUF961 Location: 575044-575335 bp Feature: domain Description: DUF961 Location: 575044-575335 bp Feature: gene Location: 575570-576430 bp Feature: domain Description: FtsK Location: 576173-576344 bp Feature: domain Description: FtsK Location: 5761 73-576344 bp Feature: gene Location: 576806-578194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577127-577742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5771 27-577742 bp Feature: domain Description: GIIM Note: maturase Location: 577805-578015 bp Feature: domain Description: GIIM Note: maturase Location: 577805-57801 5 bp Feature: gene Location: 578289-578840 bp Feature: domain Description: FtsK Location: 578313-578700 bp Feature: domain Description: FtsK Location: 57831 3-578700 bp Feature: gene Location: 578864-579910 bp Feature: domain Description: NicK Location: 578909-579902 bp Feature: domain Description: NicK Location: 578909-579902 bp Feature: gene Location: 762478-763782 bp Feature: domain Description: Tar Location: 762571-763777 bp Feature: domain Description: Tar Location: 762571 -763777 bp Feature: gene Location: 763966-764385 bp Feature: domain Description: DUF1664 Location: 763987-764167 bp Feature: domain Description: DUF1 664 Location: 763987-7641 67 bp Feature: domain Description: DUF1664 Location: 764176-764353 bp Feature: domain Description: DUF1 664 Location: 7641 76-764353 bp Feature: gene Location: 765734-767122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766055-766670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766055-766670 bp Feature: domain Description: GIIM Note: maturase Location: 766733-766943 bp Feature: domain Description: GIIM Note: maturase Location: 766733-766943 bp Feature: gene Location: 767505-768113 bp Feature: domain Description: ribE Location: 767517-768099 bp Feature: domain Description: ribE Location: 76751 7-768099 bp Feature: gene Location: 768259-768882 bp Feature: domain Description: PRK09311 Location: 768262-768862 bp Feature: domain Description: PRK0931 1 Location: 768262-768862 bp Feature: gene Location: 1058526-1058726 bp Feature: gene Location: 1058864-1059973 bp Feature: domain Description: NAAAR Location: 1058882-1059938 bp Feature: domain Description: NAAAR Location: 1 058882-1 059938 bp Feature: gene Location: 1060452-1061840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1060773-1061388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 060773-1 061 388 bp Feature: domain Description: GIIM Note: maturase Location: 1061451-1061661 bp Feature: domain Description: GIIM Note: maturase Location: 1 061 451 -1 061 661 bp Feature: gene Location: 1061915-1062115 bp Feature: gene Location: 1062237-1063835 bp Feature: domain Description: YbjL Location: 1062258-1063827 bp Feature: domain Description: YbjL Location: 1 062258-1 063827 bp Feature: gene Location: 1204429-1204665 bp Feature: domain Description: YhdB Location: 1204432-1204639 bp Feature: domain Description: YhdB Location: 1 204432-1 204639 bp Feature: gene Location: 1204975-1205595 bp Feature: domain Description: spore_YhcN_YlaJ Location: 1204993-1205584 bp Feature: domain Description: spore_YhcN_YlaJ Location: 1 204993-1 205584 bp Feature: gene Location: 1206071-1207459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1206392-1207007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 206392-1 207007 bp Feature: domain Description: GIIM Note: maturase Location: 1207070-1207280 bp Feature: domain Description: GIIM Note: maturase Location: 1 207070-1 207280 bp Feature: gene Location: 1207658-1209025 bp Feature: domain Description: M20_dipept_like Location: 1207712-1209014 bp Feature: domain Description: M20_dipept_like Location: 1 20771 2-1 20901 4 bp Feature: gene Location: 1209129-1209887 bp Feature: domain Description: PRK06924 Location: 1209132-1209882 bp Feature: domain Description: PRK06924 Location: 1 2091 32-1 209882 bp Feature: gene Location: 2013787-2014221 bp Feature: domain Description: DUF4430 Location: 2014009-2014210 bp Feature: domain Description: DUF4430 Location: 201 4009-201 421 0 bp Feature: gene Location: 2014230-2014772 bp Feature: domain Description: ECF-ribofla_trS Location: 2014236-2014689 bp Feature: domain Description: ECF-ribofla_trS Location: 201 4236-201 4689 bp Feature: gene Location: 2014822-2016210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2015143-2015758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 51 43-201 5758 bp Feature: domain Description: GIIM Note: maturase Location: 2015821-2016031 bp Feature: domain Description: GIIM Note: maturase Location: 201 5821 -201 6031 bp Feature: gene Location: 2017211-2018275 bp Feature: domain Description: YpbB Location: 2017220-2018261 bp Feature: domain Description: YpbB Location: 201 7220-201 8261 bp Feature: gene Location: 2018277-2019830 bp Feature: domain Description: RecQ Location: 2018304-2019381 bp Feature: domain Description: RecQ Location: 201 8304-201 9381 bp Feature: domain Description: RecQ_Zn_bind Location: 2019570-2019711 bp Feature: domain Description: RecQ_Zn_bind Location: 201 9570-201 971 1 bp Feature: gene Location: 3316010-3316780 bp Feature: domain Description: ectoine_ehuA Location: 3316028-3316772 bp Feature: domain Description: ectoine_ehuA Location: 331 6028-331 6772 bp Feature: gene Location: 3317347-3317559 bp Feature: domain Description: YjzC Location: 3317350-3317509 bp Feature: domain Description: YjzC Location: 331 7350-331 7509 bp Feature: gene Location: 3317737-3319125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3318058-3318673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 8058-331 8673 bp Feature: domain Description: GIIM Note: maturase Location: 3318736-3318946 bp Feature: domain Description: GIIM Note: maturase Location: 331 8736-331 8946 bp Feature: gene Location: 3319602-3320531 bp Feature: domain Description: murB Location: 3319623-3320529 bp Feature: domain Description: murB Location: 331 9623-3320529 bp Feature: gene Location: 3320567-3321379 bp Feature: domain Description: DUF915 Location: 3320663-3321365 bp Feature: domain Description: DUF91 5 Location: 3320663-3321 365 bp Feature: gene Location: 3440120-3441199 bp Feature: domain Description: BaeS Location: 3440294-3441197 bp Feature: domain Description: BaeS Location: 3440294-3441 1 97 bp Feature: gene Location: 3441204-3441899 bp Feature: domain Description: OmpR Location: 3441219-3441894 bp Feature: domain Description: OmpR Location: 3441 21 9-3441 894 bp Feature: gene Location: 3442197-3442385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3442221-3442374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3442221 -3442374 bp Feature: gene Location: 3442478-3442774 bp Feature: domain Description: RimI Location: 3442526-3442760 bp Feature: domain Description: RimI Location: 3442526-3442760 bp Feature: gene Location: 3442788-3443363 bp Feature: gene Location: 3537239-3540319 bp Feature: domain Description: ileS Location: 3537260-3540314 bp Feature: domain Description: ileS Location: 3537260-354031 4 bp Feature: gene Location: 3540451-3540762 bp Feature: domain Description: GIIM Note: maturase Location: 3540457-3540586 bp Feature: domain Description: GIIM Note: maturase Location: 3540457-3540586 bp Feature: gene Location: 3540779-3541840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3541100-3541715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3541 1 00-3541 71 5 bp Feature: gene Location: 3542911-3543207 bp Feature: gene Location: 3543603-3544214 bp Feature: gene Location: 3633262-3634314 bp Feature: domain Description: GT_WecA_like Location: 3633370-3634099 bp Feature: domain Description: GT_WecA_like Location: 3633370-3634099 bp Feature: gene Location: 3634461-3635195 bp Feature: domain Description: GDPD_TtGDE_like Location: 3634476-3635124 bp Feature: domain Description: GDPD_TtGDE_like Location: 3634476-36351 24 bp Feature: gene Location: 3635514-3636902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635835-3636450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635835-3636450 bp Feature: domain Description: GIIM Note: maturase Location: 3636513-3636723 bp Feature: domain Description: GIIM Note: maturase Location: 363651 3-3636723 bp Feature: gene Location: 3637415-3638878 bp Feature: domain Description: PotE Location: 3637424-3638819 bp Feature: domain Description: PotE Location: 3637424-363881 9 bp Feature: gene Location: 3639242-3639793 bp Feature: domain Description: DUF1572 Location: 3639269-3639749 bp Feature: domain Description: DUF1 572 Location: 3639269-3639749 bp Feature: gene Location: 4085976-4087856 bp Feature: domain Description: ZntA Location: 4086054-4087845 bp Feature: domain Description: ZntA Location: 4086054-4087845 bp Feature: gene Location: 4088243-4089676 bp Feature: domain Description: COG3666 Location: 4088267-4088705 bp Feature: domain Description: COG3666 Location: 4088267-4088705 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4089278-4089629 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 4089278-4089629 bp Feature: gene Location: 4089826-4091037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4090021-4090639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4090021 -4090639 bp Feature: domain Description: GIIM Note: maturase Location: 4090690-4090921 bp Feature: domain Description: GIIM Note: maturase Location: 4090690-4090921 bp Feature: gene Location: 4091738-4092073 bp Feature: gene Location: 4092494-4093285 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4092509-4092986 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 4092509-4092986 bp Feature: gene Location: 4095714-4095956 bp Feature: gene Location: 4096407-4097099 bp Feature: domain Description: HNHc Note: nucleases Location: 4096860-4096998 bp Feature: domain Description: HNHc Note: nucleases Location: 4096860-4096998 bp Feature: gene Location: 4097096-4098172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4097354-4098068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4097354-4098068 bp Feature: gene Location: 4099093-4100007 bp Feature: domain Description: YktD Location: 4099096-4100002 bp Feature: domain Description: YktD Location: 4099096-41 00002 bp Feature: gene Location: 4100239-4101813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4100299-4100995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 00299-41 00995 bp Feature: gene Location: 4101816-4102091 bp Feature: gene Location: 4102587-4103000 bp Feature: gene Location: 4177094-4178494 bp Feature: domain Description: cysS Location: 4177097-4178489 bp Feature: domain Description: cysS Location: 41 77097-41 78489 bp Feature: gene Location: 4178484-4179182 bp Feature: domain Description: CysE Location: 4178535-4179093 bp Feature: domain Description: CysE Location: 41 78535-41 79093 bp Feature: gene Location: 4179455-4180843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4179776-4180391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 79776-41 80391 bp Feature: domain Description: GIIM Note: maturase Location: 4180454-4180664 bp Feature: domain Description: GIIM Note: maturase Location: 41 80454-41 80664 bp Feature: gene Location: 4181567-4183036 bp Feature: domain Description: gltX Location: 4181573-4183016 bp Feature: domain Description: gltX Location: 41 81 573-41 8301 6 bp Feature: gene Location: 4183338-4184432 bp Feature: domain Description: COG4956 Location: 4183344-4184412 bp Feature: domain Description: COG4956 Location: 41 83344-41 8441 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, GIIM (pfam08388), NicK (COG2946), Tar (COG0840), DUF1664 (pfam07889), ribE (TIGR00187), PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), NAAAR (cd03317)
YbjL (COG2985), YhdB (pfam14148), spore_YhcN_YlaJ (TIGR02898), M20_dipept_like (cd05680), PRK06924 ((S)-benzoin forming benzil reductase), DUF4430 (pfam14478), ECF-ribofla_trS (pfam07155), YpbB (COG4955), RecQ (COG0514), RecQ_Zn_bind (pfam16124)
ectoine_ehuA (TIGR03005), YjzC (pfam14168), murB (TIGR00179), DUF915 (pfam06028), BaeS (COG0642), OmpR (COG0745), RimI (COG0456), ileS (TIGR00392), GT_WecA_like (cd06853), GDPD_TtGDE_like (cd08563)
PotE (COG0531), DUF1572 (pfam07609), ZntA (COG2217), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), DEDD_Tnp_IS110 (pfam01548), HNHc (smart00507), YktD (COG3315), cysS (TIGR00435), CysE (COG1045)
gltX (PRK14895), COG4956 (Uncharacterized conserved protein YacL, contains PIN and TRAM domains )

Seq: LT745762.1 (318239 bp)
Overview 1 RT 1: 5531-12081 bp 2 RT 2: 52893-57449 bp Neighborhood of RT #1 [5531, 12086] ArcA ArcA CotF RVT-GII GIIM AraJ GH4_GlvA_pagL_like Neighborhood of RT #2 [52893, 57508] Ferritin_like_AB2 Ferritin_like_AB2 Ferritin_like_AB2 RVT-GII GIIM DUF4372 DDE_Tnp_1 NTP-PPase_RS21-C6_like Feature: gene Location: 5531-6481 bp Feature: domain Description: ArcA Location: 5567-5741 bp Feature: domain Description: ArcA Location: 5567-5741 bp Feature: domain Description: ArcA Location: 5768-6479 bp Feature: domain Description: ArcA Location: 5768-6479 bp Feature: gene Location: 6617-7240 bp Feature: domain Description: CotF Location: 6809-7232 bp Feature: domain Description: CotF Location: 6809-72 32 bp Feature: gene Location: 7404-8792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7725-8340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772 5-8340 bp Feature: domain Description: GIIM Note: maturase Location: 8403-8613 bp Feature: domain Description: GIIM Note: maturase Location: 8403-8613 bp Feature: gene Location: 9277-10446 bp Feature: domain Description: AraJ Location: 9280-10411 bp Feature: domain Description: AraJ Location: 92 80-10411 bp Feature: gene Location: 10755-12086 bp Feature: domain Description: GH4_GlvA_pagL_like Location: 10773-12081 bp Feature: domain Description: GH4_GlvA_pagL_like Location: 10773-12 081 bp Feature: gene Location: 52893-53807 bp Feature: domain Description: Ferritin_like_AB2 Location: 52968-53154 bp Feature: domain Description: Ferritin_like_AB2 Location: 52 968-53154 bp Feature: domain Description: Ferritin_like_AB2 Location: 53187-53340 bp Feature: domain Description: Ferritin_like_AB2 Location: 53187-53340 bp Feature: domain Description: Ferritin_like_AB2 Location: 53433-53781 bp Feature: domain Description: Ferritin_like_AB2 Location: 53433-53781 bp Feature: gene Location: 53924-54091 bp Feature: gene Location: 54141-55529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54462-55077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54462 -55077 bp Feature: domain Description: GIIM Note: maturase Location: 55137-55350 bp Feature: domain Description: GIIM Note: maturase Location: 55137-55350 bp Feature: gene Location: 55963-56772 bp Feature: domain Description: DUF4372 Location: 55984-56188 bp Feature: domain Description: DUF4372 Location: 55984-56188 bp Feature: domain Description: DDE_Tnp_1 Location: 56329-56638 bp Feature: domain Description: DDE_Tnp_1 Location: 5632 9-56638 bp Feature: gene Location: 57134-57508 bp Feature: domain Description: NTP-PPase_RS21-C6_like Location: 57197-57449 bp Feature: domain Description: NTP-PPase_RS2 1-C6_like Location: 57197-57449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArcA (COG2235), CotF (COG5577), RVT-GII, GIIM (pfam08388), AraJ (COG2814), GH4_GlvA_pagL_like (cd05298), Ferritin_like_AB2 (cd01048), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), NTP-PPase_RS21-C6_like (cd11537)