myRT

myRT report for GCA_900166635.1_PRJEB19430

Download annotations/find similar RTs

Seq: LT800497.1 (4430231 bp)
Overview 1 RT 1: 273927-280921 bp 2 RT 2: 688812-690821 bp 3 RT 3: 742246-747751 bp 4 RT 4: 1810268-1815343 bp 5 RT 5: 1962595-1968392 bp 6 RT 6: 2650875-2654376 bp 7 RT 7: 2671817-2677177 bp 8 RT 8: 2903854-2910366 bp 9 RT 9: 3423719-3428785 bp 10 RT 10: 3484890-3489527 bp 11 RT 11: 3658639-3662324 bp Neighborhood of RT #1 [273927, 281004] PTSIIA_gutA SLC-NCS1sbd_CobB-like RVT-GII GIIM M20_Acy1L2_AbgB Neighborhood of RT #2 [688812, 690835] PHP_HisPPase_Hisj_like InsE RVT-UG2 FadR Neighborhood of RT #3 [742246, 747762] WcaG MarR_2 NagC RVT-UNC galactose_mutarotase_like PRK05270 Neighborhood of RT #4 [1810268, 1815348] MazG MFS_MefA_like RVT-GII GIIM HTH_ARSR COG3860 XRE Neighborhood of RT #5 [1962595, 1968532] PTS-II-BC-sucr DUF871 RVT-GII GIIM Acetyltransf_1 Spore-coat_CotD Neighborhood of RT #6 [2650875, 2654399] DUF2626 RVT-GII GIIM ComGF Neighborhood of RT #7 [2671817, 2677177] NptA RVT-GII GIIM NfeD Neighborhood of RT #8 [2903854, 2910470] LspA RVT-GII GIIM ileS DivIVA Neighborhood of RT #9 [3423719, 3428802] ATPgrasp_YheCD RVT-GII GIIM groEL Neighborhood of RT #10 [3484890, 3489527] FDH_like_1 RVT-GII GIIM DUF1657 Neighborhood of RT #11 [3658639, 3662332] cxxc_20_cxxc DUF2188 RVT-GII GIIM PRK06520 Feature: gene Location: 273927-274280 bp Feature: domain Description: PTSIIA_gutA Location: 273930-274266 bp Feature: domain Description: PTSIIA_gutA Location: 273930-274266 bp Feature: gene Location: 274591-275991 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 274669-275926 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 274669-275926 bp Feature: gene Location: 276468-277856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276789-277404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276789-277404 bp Feature: domain Description: GIIM Note: maturase Location: 277464-277677 bp Feature: domain Description: GIIM Note: maturase Location: 277464-277677 bp Feature: gene Location: 278201-279538 bp Feature: gene Location: 279568-281004 bp Feature: domain Description: M20_Acy1L2_AbgB Location: 279598-280921 bp Feature: domain Description: M20_Acy1 L2_AbgB Location: 279598-280921 bp Feature: gene Location: 688812-688949 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 688815-688941 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 68881 5-688941 bp Feature: gene Location: 688998-689294 bp Feature: domain Description: InsE Location: 689007-689214 bp Feature: domain Description: InsE Location: 689007-68921 4 bp Feature: gene Location: 689287-689844 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 689410-689785 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 68941 0-689785 bp Feature: gene Location: 690349-690543 bp Feature: gene Location: 690662-690835 bp Feature: domain Description: FadR Location: 690665-690821 bp Feature: domain Description: FadR Location: 690665-690821 bp Feature: gene Location: 742246-743154 bp Feature: domain Description: WcaG Location: 742249-743149 bp Feature: domain Description: WcaG Location: 742249-7431 49 bp Feature: gene Location: 743412-744584 bp Feature: domain Description: MarR_2 Location: 743460-743589 bp Feature: domain Description: MarR_2 Location: 743460-743589 bp Feature: domain Description: NagC Location: 743640-744558 bp Feature: domain Description: NagC Location: 743640-744558 bp Feature: gene Location: 744664-744888 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 744670-744832 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 744670-744832 bp Feature: gene Location: 745238-746275 bp Feature: domain Description: galactose_mutarotase_like Location: 745283-746261 bp Feature: domain Description: galactose_mutarotase_like Location: 745283-746261 bp Feature: gene Location: 746284-747762 bp Feature: domain Description: PRK05270 Location: 746290-747751 bp Feature: domain Description: PRK05270 Location: 746290-747751 bp Feature: gene Location: 1810268-1810651 bp Feature: domain Description: MazG Location: 1810334-1810646 bp Feature: domain Description: MazG Location: 1 81 0334-1 81 0646 bp Feature: gene Location: 1811137-1812366 bp Feature: domain Description: MFS_MefA_like Location: 1811182-1812301 bp Feature: domain Description: MFS_MefA_like Location: 1 81 1 1 82-1 81 2301 bp Feature: gene Location: 1812857-1814245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1813178-1813793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 31 78-1 81 3793 bp Feature: domain Description: GIIM Note: maturase Location: 1813853-1814066 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 3853-1 81 4066 bp Feature: gene Location: 1814341-1814913 bp Feature: domain Description: HTH_ARSR Location: 1814374-1814584 bp Feature: domain Description: HTH_ARSR Location: 1 81 4374-1 81 4584 bp Feature: domain Description: COG3860 Location: 1814635-1814887 bp Feature: domain Description: COG3860 Location: 1 81 4635-1 81 4887 bp Feature: gene Location: 1815136-1815348 bp Feature: domain Description: XRE Location: 1815151-1815343 bp Feature: domain Description: XRE Location: 1 81 51 51 -1 81 5343 bp Feature: gene Location: 1962595-1963974 bp Feature: domain Description: PTS-II-BC-sucr Location: 1962607-1963942 bp Feature: domain Description: PTS-II-BC-sucr Location: 1 962607-1 963942 bp Feature: gene Location: 1964030-1965100 bp Feature: domain Description: DUF871 Location: 1964033-1965089 bp Feature: domain Description: DUF871 Location: 1 964033-1 965089 bp Feature: gene Location: 1965427-1966755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1965682-1966375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 965682-1 966375 bp Feature: domain Description: GIIM Note: maturase Location: 1966456-1966663 bp Feature: domain Description: GIIM Note: maturase Location: 1 966456-1 966663 bp Feature: gene Location: 1967507-1968034 bp Feature: domain Description: Acetyltransf_1 Location: 1967696-1967963 bp Feature: domain Description: Acetyltransf_1 Location: 1 967696-1 967963 bp Feature: gene Location: 1968131-1968532 bp Feature: domain Description: Spore-coat_CotD Location: 1968197-1968392 bp Feature: domain Description: Spore-coat_CotD Location: 1 9681 97-1 968392 bp Feature: gene Location: 2650875-2651150 bp Feature: domain Description: DUF2626 Location: 2650911-2651130 bp Feature: domain Description: DUF2626 Location: 265091 1 -2651 1 30 bp Feature: gene Location: 2651210-2651488 bp Feature: gene Location: 2651564-2652892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2651819-2652512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2651 81 9-265251 2 bp Feature: domain Description: GIIM Note: maturase Location: 2652593-2652800 bp Feature: domain Description: GIIM Note: maturase Location: 2652593-2652800 bp Feature: gene Location: 2653592-2653960 bp Feature: gene Location: 2653932-2654399 bp Feature: domain Description: ComGF Location: 2653977-2654376 bp Feature: domain Description: ComGF Location: 2653977-2654376 bp Feature: gene Location: 2671817-2672023 bp Feature: gene Location: 2672355-2674088 bp Feature: domain Description: NptA Location: 2672475-2674083 bp Feature: domain Description: NptA Location: 2672475-2674083 bp Feature: gene Location: 2674269-2675528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2674464-2675082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2674464-2675082 bp Feature: domain Description: GIIM Note: maturase Location: 2675133-2675361 bp Feature: domain Description: GIIM Note: maturase Location: 26751 33-2675361 bp Feature: gene Location: 2676133-2676768 bp Feature: domain Description: NfeD Location: 2676163-2676754 bp Feature: domain Description: NfeD Location: 26761 63-2676754 bp Feature: gene Location: 2676851-2677177 bp Feature: gene Location: 2903854-2904330 bp Feature: domain Description: LspA Location: 2903860-2904319 bp Feature: domain Description: LspA Location: 2903860-290431 9 bp Feature: gene Location: 2904625-2904831 bp Feature: gene Location: 2904924-2906312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2905245-2905860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2905245-2905860 bp Feature: domain Description: GIIM Note: maturase Location: 2905920-2906133 bp Feature: domain Description: GIIM Note: maturase Location: 2905920-29061 33 bp Feature: gene Location: 2906791-2909568 bp Feature: domain Description: ileS Location: 2906821-2909551 bp Feature: domain Description: ileS Location: 2906821 -2909551 bp Feature: gene Location: 2909925-2910470 bp Feature: domain Description: DivIVA Location: 2909976-2910366 bp Feature: domain Description: DivIVA Location: 2909976-291 0366 bp Feature: gene Location: 3423719-3424006 bp Feature: gene Location: 3424071-3425090 bp Feature: domain Description: ATPgrasp_YheCD Location: 3424371-3425022 bp Feature: domain Description: ATPgrasp_YheCD Location: 3424371 -3425022 bp Feature: gene Location: 3425227-3426486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3425422-3426040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3425422-3426040 bp Feature: domain Description: GIIM Note: maturase Location: 3426091-3426319 bp Feature: domain Description: GIIM Note: maturase Location: 3426091 -342631 9 bp Feature: gene Location: 3426848-3427072 bp Feature: gene Location: 3427171-3428802 bp Feature: domain Description: groEL Location: 3427174-3428785 bp Feature: domain Description: groEL Location: 34271 74-3428785 bp Feature: gene Location: 3484890-3485054 bp Feature: gene Location: 3485139-3486311 bp Feature: domain Description: FDH_like_1 Location: 3485181-3486309 bp Feature: domain Description: FDH_like_1 Location: 34851 81 -3486309 bp Feature: gene Location: 3486614-3488002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3486935-3487550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3486935-3487550 bp Feature: domain Description: GIIM Note: maturase Location: 3487610-3487823 bp Feature: domain Description: GIIM Note: maturase Location: 348761 0-3487823 bp Feature: gene Location: 3488574-3488777 bp Feature: domain Description: DUF1657 Location: 3488595-3488739 bp Feature: domain Description: DUF1 657 Location: 3488595-3488739 bp Feature: gene Location: 3489393-3489527 bp Feature: gene Location: 3658639-3658887 bp Feature: domain Description: cxxc_20_cxxc Location: 3658648-3658864 bp Feature: domain Description: cxxc_20_cxxc Location: 3658648-3658864 bp Feature: gene Location: 3658961-3659158 bp Feature: domain Description: DUF2188 Location: 3658976-3659153 bp Feature: domain Description: DUF21 88 Location: 3658976-36591 53 bp Feature: gene Location: 3659260-3660519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3659455-3660073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3659455-3660073 bp Feature: domain Description: GIIM Note: maturase Location: 3660124-3660352 bp Feature: domain Description: GIIM Note: maturase Location: 36601 24-3660352 bp Feature: gene Location: 3660881-3661177 bp Feature: gene Location: 3661196-3662332 bp Feature: domain Description: PRK06520 Location: 3661226-3662324 bp Feature: domain Description: PRK06520 Location: 3661 226-3662324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTSIIA_gutA (pfam03829), SLC-NCS1sbd_CobB-like (cd11484), RVT-GII, GIIM (pfam08388), M20_Acy1L2_AbgB (cd05673), PHP_HisPPase_Hisj_like (cd12110), InsE (COG2963), RVT-UG2, FadR (COG2186), WcaG (COG0451)
MarR_2 (pfam12802), NagC (COG1940), RVT-G2Lc/RVT-CRISPR/RVT-GII(RVT-UNC), galactose_mutarotase_like (cd09019), PRK05270 (UDP-glucose--hexose-1-phosphate uridylyltransferase), MazG (pfam03819), MFS_MefA_like (cd06173), HTH_ARSR (smart00418), COG3860 (Uncharacterized protein, DUF2087 family ), XRE (COG1476)
PTS-II-BC-sucr (TIGR01996), DUF871 (pfam05913), Acetyltransf_1 (pfam00583), Spore-coat_CotD (pfam11122), DUF2626 (pfam11117), ComGF (pfam15980), NptA (COG1283), NfeD (pfam01957), LspA (COG0597), ileS (TIGR00392)
DivIVA (pfam05103), ATPgrasp_YheCD (pfam14398), groEL (PRK12852), FDH_like_1 (cd08283), DUF1657 (pfam07870), cxxc_20_cxxc (TIGR04104), DUF2188 (pfam09954), PRK06520 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase)