myRT

myRT report for GCA_900167945.1_IMG-taxon_2595698219_annotated_assembly

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Seq: FUZA01000011.1 (74903 bp)
Overview 1 RT 1: 64350-69057 bp Neighborhood of RT #1 [64350, 69057] RVT_N RVT-GII GIIM HNHc Toprim_2 Feature: gene Location: 64350-65114 bp Feature: gene Location: 65264-65476 bp Feature: gene Location: 66072-67772 bp Feature: domain Description: RVT_N Location: 66120-66360 bp Feature: domain Description: RVT_N Location: 661 20-66360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66414-67053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6641 4-67053 bp Feature: domain Description: GIIM Note: maturase Location: 67128-67359 bp Feature: domain Description: GIIM Note: maturase Location: 671 28-67359 bp Feature: domain Description: HNHc Note: nucleases Location: 67569-67725 bp Feature: domain Description: HNHc Note: nucleases Location: 67569-67725 bp Feature: gene Location: 67769-68611 bp Feature: domain Description: Toprim_2 Location: 68276-68537 bp Feature: domain Description: Toprim_2 Location: 68276-68537 bp Feature: gene Location: 68677-69057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Toprim_2 (pfam13155)

Seq: FUZA01000007.1 (386232 bp)
Overview 1 RT 1: 367598-371581 bp Neighborhood of RT #1 [367598, 371649] RVT-UG2 Couple_hipA HipA_C HTH_XRE Feature: gene Location: 367598-367780 bp Feature: gene Location: 368093-368290 bp Feature: gene Location: 368369-369865 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 368594-369473 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 368594-369473 bp Feature: gene Location: 370104-371351 bp Feature: domain Description: Couple_hipA Location: 370164-370389 bp Feature: domain Description: Couple_hipA Location: 370164-370389 bp Feature: domain Description: HipA_C Location: 370644-371280 bp Feature: domain Description: HipA_C Location: 370644-3712 80 bp Feature: gene Location: 371353-371649 bp Feature: domain Description: HTH_XRE Location: 371413-371581 bp Feature: domain Description: HTH_XRE Location: 371413-371581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, Couple_hipA (pfam13657), HipA_C (pfam07804), HTH_XRE (smart00530)

Seq: FUZA01000014.1 (54189 bp)
Overview 1 RT 1: 38637-45084 bp Neighborhood of RT #1 [38637, 45149] PinE DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM HNH DDE_Tnp_Tn3 TraL Feature: gene Location: 38637-39221 bp Feature: domain Description: PinE Location: 38640-39192 bp Feature: domain Description: PinE Location: 3 8640-3 9192 bp Feature: gene Location: 39398-41899 bp Feature: domain Description: DUF4158 Location: 39419-39896 bp Feature: domain Description: DUF4158 Location: 3 9419-3 9896 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 41234-41780 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4123 4-41780 bp Feature: gene Location: 42347-44014 bp Feature: domain Description: RVT_N Location: 42407-42650 bp Feature: domain Description: RVT_N Location: 42407-42650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42695-43355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42695-43 3 55 bp Feature: domain Description: GIIM Note: maturase Location: 43409-43643 bp Feature: domain Description: GIIM Note: maturase Location: 43 409-43 643 bp Feature: domain Description: HNH Note: nucleases Location: 43856-43991 bp Feature: domain Description: HNH Note: nucleases Location: 43 856-43 991 bp Feature: gene Location: 43962-44795 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 44091-44724 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 44091-44724 bp Feature: gene Location: 44871-45149 bp Feature: domain Description: TraL Location: 44880-45084 bp Feature: domain Description: TraL Location: 44880-45084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), TraL (pfam07178)