myRT

myRT report for GCA_900170035.1_Desulfamplus_magnetomortis_BW-1

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Seq: LT828545.1 (286473 bp)
Overview 1 RT 1: 403-4417 bp Neighborhood of RT #1 [403, 4452] HRDC Avd_like RVT-DGRs YfmG AAA-ATPase_like PDDEXK_9 Feature: gene Location: 403-963 bp Feature: domain Description: HRDC Location: 622-820 bp Feature: domain Description: HRDC Location: 622-820 bp Feature: gene Location: 997-1326 bp Feature: domain Description: Avd_like Location: 1018-1324 bp Feature: domain Description: Avd_like Location: 1 01 8-1 324 bp Feature: gene Location: 1323-2303 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1527-2115 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 527-21 1 5 bp Feature: gene Location: 2322-2564 bp Feature: domain Description: YfmG Location: 2337-2457 bp Feature: domain Description: YfmG Location: 2337-2457 bp Feature: gene Location: 2860-4452 bp Feature: domain Description: AAA-ATPase_like Location: 2887-3733 bp Feature: domain Description: AAA-ATPase_like Location: 2887-3733 bp Feature: domain Description: PDDEXK_9 Location: 4144-4417 bp Feature: domain Description: PDDEXK_9 Location: 41 44-441 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HRDC (smart00341), Avd_like (cd16376), RVT-DGRs, YfmG (COG1262), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: LT828550.1 (211502 bp)
Overview 1 RT 1: 35581-39823 bp Neighborhood of RT #1 [35581, 39823] RVT_N RVT-GII GIIM Feature: gene Location: 35581-35952 bp Feature: gene Location: 36391-36531 bp Feature: gene Location: 36800-38263 bp Feature: domain Description: RVT_N Location: 36851-37091 bp Feature: domain Description: RVT_N Location: 36851-37091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37139-37763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37139-37763 bp Feature: domain Description: GIIM Note: maturase Location: 37817-38048 bp Feature: domain Description: GIIM Note: maturase Location: 37817-38048 bp Feature: gene Location: 38517-38819 bp Feature: gene Location: 39167-39823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LT828549.1 (235686 bp)
Overview 1 RT 1: 47354-51267 bp 2 RT 2: 110719-115941 bp Neighborhood of RT #1 [47354, 51326] RVT_N RVT-GII RVT_N RVT-GII COG4683 HTH_XRE Neighborhood of RT #2 [110719, 116789] Avd_like RVT-DGRs MutS_I GxxExxY DUF1566 PKD PKD PKD BID_2 Peptidase_C13 Feature: gene Location: 47354-47722 bp Feature: gene Location: 47917-48057 bp Feature: gene Location: 48430-48969 bp Feature: domain Description: RVT_N Location: 48478-48721 bp Feature: domain Description: RVT_N Location: 48478-48721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48766-48955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48766-48955 bp Feature: gene Location: 49282-50265 bp Feature: domain Description: RVT_N Location: 49333-49573 bp Feature: domain Description: RVT_N Location: 493 3 3 -49573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49621-50230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49621-5023 0 bp Feature: gene Location: 50651-51007 bp Feature: domain Description: COG4683 Location: 50654-51002 bp Feature: domain Description: COG4683 Location: 50654-51002 bp Feature: gene Location: 51018-51326 bp Feature: domain Description: HTH_XRE Location: 51114-51267 bp Feature: domain Description: HTH_XRE Location: 51114-51267 bp Feature: gene Location: 110719-111084 bp Feature: domain Description: Avd_like Location: 110746-111055 bp Feature: domain Description: Avd_like Location: 110746-111055 bp Feature: gene Location: 111238-111720 bp Feature: gene Location: 111661-113037 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111667-112306 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111667-1123 06 bp Feature: domain Description: MutS_I Location: 112705-112924 bp Feature: domain Description: MutS_I Location: 112705-112924 bp Feature: gene Location: 113454-113825 bp Feature: domain Description: GxxExxY Location: 113475-113811 bp Feature: domain Description: GxxExxY Location: 113 475-113 811 bp Feature: gene Location: 113949-116789 bp Feature: domain Description: DUF1566 Location: 114039-114375 bp Feature: domain Description: DUF1566 Location: 11403 9-1143 75 bp Feature: domain Description: PKD Location: 114414-114645 bp Feature: domain Description: PKD Location: 114414-114645 bp Feature: domain Description: PKD Location: 114687-114915 bp Feature: domain Description: PKD Location: 114687-114915 bp Feature: domain Description: PKD Location: 114966-115194 bp Feature: domain Description: PKD Location: 114966-115194 bp Feature: domain Description: BID_2 Location: 115236-115422 bp Feature: domain Description: BID_2 Location: 11523 6-115422 bp Feature: domain Description: Peptidase_C13 Location: 115704-115941 bp Feature: domain Description: Peptidase_C13 Location: 115704-115941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG4683 (Uncharacterized protein ), HTH_XRE (smart00530), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), GxxExxY (TIGR04256), DUF1566 (pfam07603), PKD (smart00089)
BID_2 (smart00635), Peptidase_C13 (pfam01650)

Seq: LT828540.1 (1093269 bp)
Overview 1 RT 1: 1043467-1049356 bp Neighborhood of RT #1 [1043467, 1049364] dinD RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like RVT-AbiP2 COG2865 COG3943 Feature: gene Location: 1043467-1043742 bp Feature: domain Description: dinD Location: 1043515-1043728 bp Feature: domain Description: dinD Location: 104 3515-104 3728 bp Feature: gene Location: 1043900-1045135 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 1043954-1044500 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 104 3954 -104 4 500 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 1044692-1045088 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 104 4 692-104 5088 bp Feature: gene Location: 1045215-1046747 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1045644-1046106 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 104 564 4 -104 6106 bp Feature: gene Location: 1046920-1048266 bp Feature: domain Description: COG2865 Location: 1046932-1048258 bp Feature: domain Description: COG2865 Location: 104 6932-104 8258 bp Feature: gene Location: 1048270-1049364 bp Feature: domain Description: COG3943 Location: 1048363-1049356 bp Feature: domain Description: COG394 3 Location: 104 8363-104 9356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dinD (PRK11525), RMtype1_S_SonII-TRD2-CR2_like (cd17246), RVT-AbiP2, COG2865 (Predicted transcriptional regulator, contains HTH domain ), COG3943 (Uncharacterized conserved protein )