myRT

myRT report for GCA_900180245.1_19952_4_120

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Seq: FXKU01000042.1 (20746 bp)
Overview 1 RT 1: 16465-20428 bp Neighborhood of RT #1 [16465, 20428] CwlT_like Spr RVT-GII HNHc Feature: gene Location: 16465-17601 bp Feature: domain Description: CwlT_like Location: 16711-17188 bp Feature: domain Description: CwlT_like Location: 1 671 1 -1 71 88 bp Feature: domain Description: Spr Location: 17212-17572 bp Feature: domain Description: Spr Location: 1 721 2-1 7572 bp Feature: gene Location: 17623-17934 bp Feature: gene Location: 18131-20008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18446-19184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8446-1 91 84 bp Feature: domain Description: HNHc Note: nucleases Location: 19742-19895 bp Feature: domain Description: HNHc Note: nucleases Location: 1 9742-1 9895 bp Feature: gene Location: 20195-20428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, Spr (COG0791), RVT-GII, HNHc (smart00507)

Seq: FXKU01000061.1 (10237 bp)
Overview 1 RT 1: 63-4756 bp Neighborhood of RT #1 [63, 4830] RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 63-1538 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 411-876 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 411-876 bp Feature: gene Location: 1685-2857 bp Feature: domain Description: Transposase_mut Location: 1688-2825 bp Feature: domain Description: Transposase_mut Location: 1688-2 82 5 bp Feature: gene Location: 3208-4830 bp Feature: domain Description: HsdM Location: 3229-4756 bp Feature: domain Description: HsdM Location: 32 2 9-4756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)

Seq: FXKU01000008.1 (88761 bp)
Overview 1 RT 1: 12418-24850 bp Neighborhood of RT #1 [12418, 24927] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 12418-14541 bp Feature: gene Location: 14546-15466 bp Feature: domain Description: AAA_10 Location: 14552-15431 bp Feature: domain Description: AAA_10 Location: 14552-1543 1 bp Feature: gene Location: 15600-17426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15900-16599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15900-16599 bp Feature: gene Location: 18123-19673 bp Feature: domain Description: AAA_10 Location: 19452-19635 bp Feature: domain Description: AAA_10 Location: 19452-1963 5 bp Feature: gene Location: 19660-20049 bp Feature: domain Description: TcpE Location: 19678-19978 bp Feature: domain Description: TcpE Location: 19678-19978 bp Feature: gene Location: 20109-20612 bp Feature: domain Description: ArdA Location: 20127-20598 bp Feature: domain Description: ArdA Location: 20127-20598 bp Feature: gene Location: 20614-20823 bp Feature: gene Location: 20953-22863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21286-22024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21286-22024 bp Feature: domain Description: HNHc Note: nucleases Location: 22579-22744 bp Feature: domain Description: HNHc Note: nucleases Location: 22579-22744 bp Feature: gene Location: 23372-23521 bp Feature: gene Location: 23743-24927 bp Feature: domain Description: HTH_XRE Location: 23773-23917 bp Feature: domain Description: HTH_XRE Location: 23 773 -23 917 bp Feature: domain Description: Rol_Rep_N Location: 23950-24214 bp Feature: domain Description: Rol_Rep_N Location: 23 950-24214 bp Feature: domain Description: Rep_trans Location: 24238-24850 bp Feature: domain Description: Rep_trans Location: 2423 8-24850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)