myRT

myRT report for GCA_900180835.1_14893_8_81

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Seq: FXNC01000021.1 (91727 bp)
Overview 1 RT 1: 1519-4552 bp Neighborhood of RT #1 [1519, 4552] RVT-GII Feature: gene Location: 1519-1740 bp Feature: gene Location: 2002-2232 bp Feature: gene Location: 2466-3953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871-3561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871 -3561 bp Feature: gene Location: 4107-4403 bp Feature: gene Location: 4406-4552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FXNC01000040.1 (22205 bp)
Overview 1 RT 1: 5931-10121 bp Neighborhood of RT #1 [5931, 10121] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII Feature: gene Location: 5931-6602 bp Feature: domain Description: Plasmid_stab_B Location: 5946-6153 bp Feature: domain Description: Plasmid_stab_B Location: 5946-6153 bp Feature: domain Description: Plasmid_stab_B Location: 6258-6465 bp Feature: domain Description: Plasmid_stab_B Location: 62 58-6465 bp Feature: gene Location: 6605-7579 bp Feature: domain Description: StbA Location: 6611-7556 bp Feature: domain Description: StbA Location: 6611-7556 bp Feature: gene Location: 7825-9312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8230-8920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 30-892 0 bp Feature: gene Location: 9363-9596 bp Feature: gene Location: 9726-10121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII

Seq: FXNC01000002.1 (438913 bp)
Overview 1 RT 1: 319197-326050 bp Neighborhood of RT #1 [319197, 326067] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 319197-319862 bp Feature: domain Description: INT_P4_C Location: 319302-319860 bp Feature: domain Description: INT_P4_C Location: 3 193 02-3 19860 bp Feature: gene Location: 320123-320563 bp Feature: domain Description: Integrase_1 Location: 320129-320345 bp Feature: domain Description: Integrase_1 Location: 3 20129-3 203 45 bp Feature: gene Location: 320620-322698 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 321028-321472 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 21028-3 21472 bp Feature: gene Location: 322698-325307 bp Feature: domain Description: FimD Location: 322755-325296 bp Feature: domain Description: FimD Location: 3 22755-3 25296 bp Feature: gene Location: 325339-326067 bp Feature: domain Description: FimC Location: 325387-326050 bp Feature: domain Description: FimC Location: 3 253 87-3 26050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)