myRT

myRT report for GCA_900181255.1_14936_2_9

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Seq: FXOQ01000033.1 (23565 bp)
Overview 1 RT 1: 405-5427 bp 2 RT 2: 14024-18331 bp Neighborhood of RT #1 [405, 5435] ArdC RVT-GII PRK10276 umuC Neighborhood of RT #2 [14024, 18339] InsE PHA02517 RVT-GII GIIM PHA02517 APH Feature: gene Location: 405-1370 bp Feature: domain Description: ArdC Location: 531-1365 bp Feature: domain Description: ArdC Location: 531 -1 365 bp Feature: gene Location: 1502-1771 bp Feature: gene Location: 1840-3327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2245-2935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2245-2935 bp Feature: gene Location: 3481-4164 bp Feature: domain Description: PRK10276 Location: 3784-4147 bp Feature: domain Description: PRK1 0276 Location: 3784-41 47 bp Feature: gene Location: 4164-5435 bp Feature: domain Description: umuC Location: 4167-5427 bp Feature: domain Description: umuC Location: 41 67-5427 bp Feature: gene Location: 14024-14308 bp Feature: domain Description: InsE Location: 14036-14297 bp Feature: domain Description: InsE Location: 1 4036-1 4297 bp Feature: gene Location: 14356-14775 bp Feature: domain Description: PHA02517 Location: 14371-14710 bp Feature: domain Description: PHA0251 7 Location: 1 4371 -1 471 0 bp Feature: gene Location: 15367-16890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15640-16372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5640-1 6372 bp Feature: domain Description: GIIM Note: maturase Location: 16447-16645 bp Feature: domain Description: GIIM Note: maturase Location: 1 6447-1 6645 bp Feature: gene Location: 17100-17429 bp Feature: domain Description: PHA02517 Location: 17103-17421 bp Feature: domain Description: PHA0251 7 Location: 1 71 03-1 7421 bp Feature: gene Location: 17350-18339 bp Feature: domain Description: APH Location: 17578-18331 bp Feature: domain Description: APH Location: 1 7578-1 8331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), APH (pfam01636)

Seq: FXOQ01000002.1 (437835 bp)
Overview 1 RT 1: 318143-324996 bp Neighborhood of RT #1 [318143, 325013] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 318143-318808 bp Feature: domain Description: INT_P4_C Location: 318248-318806 bp Feature: domain Description: INT_P4_C Location: 3182 48-318806 bp Feature: gene Location: 319069-319509 bp Feature: domain Description: Integrase_1 Location: 319075-319291 bp Feature: domain Description: Integrase_1 Location: 319075-3192 91 bp Feature: gene Location: 319566-321644 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 319974-320418 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 319974-32 0418 bp Feature: gene Location: 321644-324253 bp Feature: domain Description: FimD Location: 321701-324242 bp Feature: domain Description: FimD Location: 32 1701-32 42 42 bp Feature: gene Location: 324285-325013 bp Feature: domain Description: FimC Location: 324333-324996 bp Feature: domain Description: FimC Location: 32 4333-32 4996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)