myRT

myRT report for GCA_900186535.1_PRJEB21316

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Seq: FYDE01000003.1 (559257 bp)
Overview 1 RT 1: 128727-136475 bp 2 RT 2: 142210-147721 bp 3 RT 3: 429394-435086 bp Neighborhood of RT #1 [128727, 136579] RVT-GII HNHc DUF3852 RVT-GII Intron_maturas2 HNHc DUF3852 YkvA Neighborhood of RT #2 [142210, 147721] HTH_ARSR VirB4 VirB4 RVT-GII HNHc Neighborhood of RT #3 [429394, 435121] RVT-DGRs Phage_tail_APC Phage_holin_4_1 Feature: gene Location: 128727-130448 bp Feature: gene Location: 130477-130662 bp Feature: gene Location: 131165-133147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131483-132218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 483-1 3221 8 bp Feature: domain Description: HNHc Note: nucleases Location: 132839-132974 bp Feature: domain Description: HNHc Note: nucleases Location: 1 32839-1 32974 bp Feature: gene Location: 133304-133561 bp Feature: domain Description: DUF3852 Location: 133313-133538 bp Feature: domain Description: DUF3852 Location: 1 3331 3-1 33538 bp Feature: gene Location: 134137-135954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134401-135223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34401 -1 35223 bp Feature: domain Description: Intron_maturas2 Location: 135304-135622 bp Feature: domain Description: Intron_maturas2 Location: 1 35304-1 35622 bp Feature: domain Description: HNHc Note: nucleases Location: 135775-135925 bp Feature: domain Description: HNHc Note: nucleases Location: 1 35775-1 35925 bp Feature: gene Location: 135958-136164 bp Feature: domain Description: DUF3852 Location: 136060-136156 bp Feature: domain Description: DUF3852 Location: 1 36060-1 361 56 bp Feature: gene Location: 136211-136579 bp Feature: domain Description: YkvA Location: 136241-136475 bp Feature: domain Description: YkvA Location: 1 36241 -1 36475 bp Feature: gene Location: 142210-142575 bp Feature: domain Description: HTH_ARSR Location: 142294-142501 bp Feature: domain Description: HTH_ARSR Location: 1 42294-1 42501 bp Feature: gene Location: 142570-144210 bp Feature: domain Description: VirB4 Location: 142954-143518 bp Feature: domain Description: VirB4 Location: 1 42954-1 4351 8 bp Feature: domain Description: VirB4 Location: 143896-144199 bp Feature: domain Description: VirB4 Location: 1 43896-1 441 99 bp Feature: gene Location: 145011-146789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145206-145923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45206-1 45923 bp Feature: domain Description: HNHc Note: nucleases Location: 146541-146712 bp Feature: domain Description: HNHc Note: nucleases Location: 1 46541 -1 4671 2 bp Feature: gene Location: 146958-147206 bp Feature: gene Location: 147254-147721 bp Feature: gene Location: 429394-431232 bp Feature: gene Location: 431237-432955 bp Feature: gene Location: 433198-434256 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 433414-434002 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43341 4-434002 bp Feature: gene Location: 434216-434662 bp Feature: domain Description: Phage_tail_APC Location: 434465-434645 bp Feature: domain Description: Phage_tail_APC Location: 434465-434645 bp Feature: gene Location: 434678-435121 bp Feature: domain Description: Phage_holin_4_1 Location: 434723-435086 bp Feature: domain Description: Phage_holin_4_1 Location: 434723-435086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), DUF3852 (pfam12963), Intron_maturas2 (pfam01348), YkvA (COG3339), HTH_ARSR (smart00418), VirB4 (COG3451), RVT-DGRs, Phage_tail_APC (pfam16778), Phage_holin_4_1 (pfam05105)

Seq: FYDE01000004.1 (876947 bp)
Overview 1 RT 1: 696058-700453 bp Neighborhood of RT #1 [696058, 700473] sigma70-ECF RVT-GII RVT-GII GIIM AAA_25 MobC Feature: gene Location: 696058-696903 bp Feature: domain Description: sigma70-ECF Location: 696535-696880 bp Feature: domain Description: sigma70-ECF Location: 696535-696880 bp Feature: gene Location: 696907-697167 bp Feature: gene Location: 697346-697954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697697-697925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697697-69792 5 bp Feature: gene Location: 698104-698757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698107-698314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698107-698314 bp Feature: domain Description: GIIM Note: maturase Location: 698371-698602 bp Feature: domain Description: GIIM Note: maturase Location: 698371-698602 bp Feature: gene Location: 698976-700157 bp Feature: domain Description: AAA_25 Location: 699045-699528 bp Feature: domain Description: AAA_2 5 Location: 699045-69952 8 bp Feature: gene Location: 700159-700473 bp Feature: domain Description: MobC Location: 700330-700453 bp Feature: domain Description: MobC Location: 700330-700453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sigma70-ECF (TIGR02937), RVT-GII, GIIM (pfam08388), AAA_25 (pfam13481), MobC (pfam05713)

Seq: FYDE01000005.1 (2085676 bp)
Overview 1 RT 1: 264686-269393 bp 2 RT 2: 277433-283170 bp Neighborhood of RT #1 [264686, 269506] DUF3852 RVT-GII Intron_maturas2 HNHc DUF5131 VOC_like Neighborhood of RT #2 [277433, 283170] VirB4 VirB4 RVT-GII HNHc Feature: gene Location: 264686-265156 bp Feature: gene Location: 265227-265481 bp Feature: domain Description: DUF3852 Location: 265236-265458 bp Feature: domain Description: DUF3 852 Location: 26523 6-265458 bp Feature: gene Location: 266057-267874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266321-267143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2663 21-267143 bp Feature: domain Description: Intron_maturas2 Location: 267224-267542 bp Feature: domain Description: Intron_maturas2 Location: 267224-267542 bp Feature: domain Description: HNHc Note: nucleases Location: 267695-267845 bp Feature: domain Description: HNHc Note: nucleases Location: 267695-267845 bp Feature: gene Location: 268254-268976 bp Feature: domain Description: DUF5131 Location: 268260-268887 bp Feature: domain Description: DUF513 1 Location: 268260-268887 bp Feature: gene Location: 269036-269506 bp Feature: domain Description: VOC_like Location: 269039-269393 bp Feature: domain Description: VOC_like Location: 26903 9-2693 93 bp Feature: gene Location: 277433-278035 bp Feature: gene Location: 278058-279626 bp Feature: domain Description: VirB4 Location: 278313-278955 bp Feature: domain Description: VirB4 Location: 2783 13 -278955 bp Feature: domain Description: VirB4 Location: 279303-279615 bp Feature: domain Description: VirB4 Location: 2793 03 -279615 bp Feature: gene Location: 280427-282205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280622-281339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280622-2813 3 9 bp Feature: domain Description: HNHc Note: nucleases Location: 281957-282128 bp Feature: domain Description: HNHc Note: nucleases Location: 281957-282128 bp Feature: gene Location: 282452-282670 bp Feature: gene Location: 282691-283170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3852 (pfam12963), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF5131 (pfam07505), VOC_like (cd16355), VirB4 (COG3451)