myRT

myRT report for GCA_900187465.1_3A18

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Seq: FYDI01000013.1 (118953 bp)
Overview 1 RT 1: 23209-31418 bp Neighborhood of RT #1 [23209, 31418] RVT-UG8 Integrase_1 Feature: gene Location: 23209-23460 bp Feature: gene Location: 23532-25802 bp Feature: gene Location: 26061-27992 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 26559-26982 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 26559-26982 bp Feature: gene Location: 29775-30746 bp Feature: domain Description: Integrase_1 Location: 30186-30594 bp Feature: domain Description: Integrase_1 Location: 301 86-30594 bp Feature: gene Location: 31032-31418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, Integrase_1 (pfam12835)

Seq: FYDI01000002.1 (595740 bp)
Overview 1 RT 1: 223153-227274 bp 2 RT 2: 230049-233174 bp Neighborhood of RT #1 [223153, 227807] COG5001 SLATT_5 RVT-UG17 Neighborhood of RT #2 [230049, 233215] RVT-UG8 PRK13877 Feature: gene Location: 223153-225306 bp Feature: domain Description: COG5001 Location: 223372-225256 bp Feature: domain Description: COG5001 Location: 2 2 3372 -2 2 52 56 bp Feature: gene Location: 225904-226446 bp Feature: domain Description: SLATT_5 Location: 225910-226408 bp Feature: domain Description: SLATT_5 Location: 2 2 5910-2 2 6408 bp Feature: gene Location: 226488-227807 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 226671-227274 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 2 6671-2 2 72 74 bp Feature: gene Location: 230049-232058 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 230568-231000 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 30568-2 31000 bp Feature: gene Location: 232493-232681 bp Feature: gene Location: 232844-233215 bp Feature: domain Description: PRK13877 Location: 232865-233174 bp Feature: domain Description: PRK13877 Location: 2 32 865-2 33174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5001 (Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain ), SLATT_5 (pfam18160), RVT-UG17, RVT-UG8, PRK13877 (conjugal transfer transcriptional regulator TraJ)

Seq: FYDI01000007.1 (340794 bp)
Overview 1 RT 1: 9915-15969 bp Neighborhood of RT #1 [9915, 15986] DUF4406 DUF4406 Dcm Dcm RVT-DGRs DUF1566 DUF1566 Feature: gene Location: 9915-11033 bp Feature: domain Description: DUF4406 Location: 9927-10194 bp Feature: domain Description: DUF4406 Location: 9927-10194 bp Feature: domain Description: DUF4406 Location: 10659-10812 bp Feature: domain Description: DUF4406 Location: 10659-10812 bp Feature: gene Location: 11071-12666 bp Feature: domain Description: Dcm Location: 11074-11677 bp Feature: domain Description: Dcm Location: 11074-11677 bp Feature: domain Description: Dcm Location: 12397-12655 bp Feature: domain Description: Dcm Location: 123 97-12655 bp Feature: gene Location: 12909-14084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13158-13842 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 158-13 842 bp Feature: gene Location: 14702-15310 bp Feature: domain Description: DUF1566 Location: 14786-15293 bp Feature: domain Description: DUF1566 Location: 14786-15293 bp Feature: gene Location: 15378-15986 bp Feature: domain Description: DUF1566 Location: 15768-15969 bp Feature: domain Description: DUF1566 Location: 15768-15969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4406 (pfam14359), Dcm (COG0270), RVT-DGRs, DUF1566 (pfam07603)