myRT

myRT report for GCA_900188505.1_SUK123

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Seq: FYEP01000001.1 (505699 bp)
Overview 1 RT 1: 296901-301648 bp Neighborhood of RT #1 [296901, 301740] DUF5643 DUF5643 Sig70_famx3 RVT-UG17 PolC Feature: gene Location: 296901-297992 bp Feature: domain Description: DUF5643 Location: 297246-297363 bp Feature: domain Description: DUF5643 Location: 297246-297363 bp Feature: domain Description: DUF5643 Location: 297636-297954 bp Feature: domain Description: DUF5643 Location: 297636-297954 bp Feature: gene Location: 297979-298575 bp Feature: domain Description: Sig70_famx3 Location: 298054-298522 bp Feature: domain Description: Sig70_famx3 Location: 298054-298522 bp Feature: gene Location: 299526-300824 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 299691-300291 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 299691 -300291 bp Feature: gene Location: 300847-300978 bp Feature: gene Location: 301144-301740 bp Feature: domain Description: PolC Location: 301165-301648 bp Feature: domain Description: PolC Location: 301 1 65-301 648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5643 (pfam18705), Sig70_famx3 (TIGR02954), RVT-UG17, PolC (COG2176)

Seq: FYEP01000052.1 (21945 bp)
Overview 1 RT 1: 9845-17046 bp Neighborhood of RT #1 [9845, 17046] MFS_MMR_MDR_like YhcF RVT-GII RVT-GII RVT-GII GIIM Feature: gene Location: 9845-11284 bp Feature: domain Description: MFS_MMR_MDR_like Location: 9932-11231 bp Feature: domain Description: MFS_MMR_MDR_like Location: 9932 -112 31 bp Feature: gene Location: 11901-12890 bp Feature: domain Description: YhcF Location: 12375-12567 bp Feature: domain Description: YhcF Location: 12 375-12 567 bp Feature: gene Location: 12913-13461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13219-13450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 19-13450 bp Feature: gene Location: 13780-15300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14206-14893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 06-14893 bp Feature: gene Location: 15374-15835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15377-15755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15377-15755 bp Feature: gene Location: 15841-16125 bp Feature: domain Description: GIIM Note: maturase Location: 15844-16060 bp Feature: domain Description: GIIM Note: maturase Location: 15844-16060 bp Feature: gene Location: 16162-17046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), YhcF (COG1725), RVT-GII, GIIM (pfam08388)

Seq: FYEP01000003.1 (373689 bp)
Overview 1 RT 1: 190400-192511 bp Neighborhood of RT #1 [190400, 192511] PHA02517 group_II_RT_mat RVT-GII Feature: gene Location: 190400-190612 bp Feature: domain Description: PHA02517 Location: 190403-190598 bp Feature: domain Description: PHA02517 Location: 190403 -190598 bp Feature: gene Location: 191261-191539 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 191294-191504 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 191294-191504 bp Feature: gene Location: 191613-192065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191619-192030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191619-19203 0 bp Feature: gene Location: 192068-192244 bp Feature: gene Location: 192314-192511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), group_II_RT_mat (TIGR04416), RVT-GII

Seq: FYEP01000027.1 (108369 bp)
Overview 1 RT 1: 53327-65739 bp Neighborhood of RT #1 [53327, 65759] SLH SLH SLH CARDB PKD PKD RVT-GII HNHc FN3 FN3 Y_Y_Y NfsA_FRP AlkD_like_1 Feature: gene Location: 53327-54469 bp Feature: domain Description: SLH Location: 53456-53576 bp Feature: domain Description: SLH Location: 534 56-53576 bp Feature: domain Description: SLH Location: 53630-53675 bp Feature: domain Description: SLH Location: 53630-53675 bp Feature: domain Description: SLH Location: 53819-53891 bp Feature: domain Description: SLH Location: 53819-53891 bp Feature: gene Location: 54486-59843 bp Feature: domain Description: CARDB Location: 55428-55734 bp Feature: domain Description: CARDB Location: 554 28-55734 bp Feature: domain Description: PKD Location: 56214-56442 bp Feature: domain Description: PKD Location: 56214 -564 4 2 bp Feature: domain Description: PKD Location: 56745-57000 bp Feature: domain Description: PKD Location: 5674 5-57000 bp Feature: gene Location: 60501-64445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60834-61536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60834 -61536 bp Feature: domain Description: HNHc Note: nucleases Location: 62130-62292 bp Feature: domain Description: HNHc Note: nucleases Location: 62130-62292 bp Feature: domain Description: FN3 Location: 62820-63054 bp Feature: domain Description: FN3 Location: 62820-63054 bp Feature: domain Description: FN3 Location: 63480-63732 bp Feature: domain Description: FN3 Location: 634 80-63732 bp Feature: domain Description: Y_Y_Y Location: 63918-63999 bp Feature: domain Description: Y_Y_Y Location: 63918-63999 bp Feature: gene Location: 64649-65383 bp Feature: domain Description: NfsA_FRP Location: 64661-65327 bp Feature: domain Description: NfsA_FRP Location: 64 661-65327 bp Feature: gene Location: 65385-65759 bp Feature: domain Description: AlkD_like_1 Location: 65391-65739 bp Feature: domain Description: AlkD_like_1 Location: 65391-65739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), CARDB (pfam07705), PKD (smart00089), RVT-GII, HNHc (smart00507), FN3 (smart00060), Y_Y_Y (pfam07495), NfsA_FRP, AlkD_like_1 (cd07064)