myRT

myRT report for GCA_900205385.1_PV1BC

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Seq: OAMP01000004.1 (225212 bp)
Overview 1 RT 1: 181613-188481 bp Neighborhood of RT #1 [181613, 188483] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 181613-182341 bp Feature: domain Description: FimC Location: 181661-182324 bp Feature: domain Description: FimC Location: 1 81 661 -1 82324 bp Feature: gene Location: 182373-184982 bp Feature: domain Description: FimD Location: 182430-184971 bp Feature: domain Description: FimD Location: 1 82430-1 84971 bp Feature: gene Location: 184982-187060 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 185390-185834 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 85390-1 85834 bp Feature: gene Location: 187117-187557 bp Feature: domain Description: Integrase_1 Location: 187123-187339 bp Feature: domain Description: Integrase_1 Location: 1 871 23-1 87339 bp Feature: gene Location: 187818-188483 bp Feature: domain Description: INT_P4_C Location: 187923-188481 bp Feature: domain Description: INT_P4_C Location: 1 87923-1 88481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: OAMP01000181.1 (551 bp)
Overview 1 RT 1: 2-485 bp Neighborhood of RT #1 [2, 550] RVT-GII Feature: gene Location: 2-550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29-485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9-485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: OAMP01000064.1 (3920 bp)
Overview 1 RT 1: 2-1789 bp Neighborhood of RT #1 [2, 1824] RVT-GII PHA02517 InsE Feature: gene Location: 2-490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-488 bp Feature: gene Location: 1082-1516 bp Feature: domain Description: PHA02517 Location: 1184-1451 bp Feature: domain Description: PHA02517 Location: 1184-1451 bp Feature: gene Location: 1513-1824 bp Feature: domain Description: InsE Location: 1516-1789 bp Feature: domain Description: InsE Location: 1516-1789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: OAMP01000176.1 (1864 bp)
Overview 1 RT 1: 2-1574 bp Neighborhood of RT #1 [2, 1588] RVT-GII PRK10276 Feature: gene Location: 2-760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 07-758 bp Feature: gene Location: 766-933 bp Feature: gene Location: 1163-1588 bp Feature: domain Description: PRK10276 Location: 1166-1574 bp Feature: domain Description: PRK10276 Location: 1166-1574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: OAMP01000106.1 (3454 bp)
Overview 1 RT 1: 887-3206 bp Neighborhood of RT #1 [887, 3451] COG4941 PHA02517 RVT-GII GIIM Feature: gene Location: 887-1438 bp Feature: domain Description: COG4941 Location: 890-1409 bp Feature: domain Description: COG4941 Location: 890-1409 bp Feature: gene Location: 1962-2417 bp Feature: domain Description: PHA02517 Location: 1971-2391 bp Feature: domain Description: PHA025 17 Location: 1971-2391 bp Feature: gene Location: 2513-3451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2522-2933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 22-2933 bp Feature: domain Description: GIIM Note: maturase Location: 3008-3206 bp Feature: domain Description: GIIM Note: maturase Location: 3008-3206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: OAMP01000073.1 (10173 bp)
Overview 1 RT 1: 8170-9780 bp Neighborhood of RT #1 [8170, 10172] RVT-GII Feature: gene Location: 8170-8340 bp Feature: gene Location: 8674-8904 bp Feature: gene Location: 9138-10172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9141-9780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9141-9780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII