myRT

myRT report for GCA_900215425.1_IMG-taxon_2734482178_annotated_assembly

Download annotations/find similar RTs

Seq: OCMW01000001.1 Variovorax sp. YR752 genome assembly, contig: Ga0115526_11, whole genome shotgun sequence (7175498 bp)
Overview 1 RT 1: 2110122-2121433 bp 2 RT 2: 4722380-4731672 bp 3 RT 3: 5513355-5518810 bp Neighborhood of RT #1 [2110122, 2121444] COG3547 dnaG RVT-UG10 RVT-UG10 DUF938 Tae4 Neighborhood of RT #2 [4722380, 4731701] HEAT_2 HEAT_2 HEAT_2 RVT-Retrons Acetyltransf_1 Acetyltransf_1 RIO1 Neighborhood of RT #3 [5513355, 5518860] trp_2_3_diox RVT-Retrons PRK08163 Feature: gene Location: 2110122-2111159 bp Ori: SOD25639.1 Feature: domain Description: COG3547 Location: 2110137-2111103 bp Feature: domain Description: COG3547 Location: 21 1 01 37-21 1 1 1 03 bp Feature: gene Location: 2111583-2111828 bp Feature: gene Location: 2112362-2119876 bp Ori: SOD25642.1 Feature: domain Description: dnaG Location: 2112374-2113433 bp Feature: domain Description: dnaG Location: 21 1 2374-21 1 3433 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 2114294-2114522 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 21 1 4294-21 1 4522 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 2114693-2114939 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 21 1 4693-21 1 4939 bp Feature: gene Location: 2120006-2120665 bp Ori: SOD25644.1 Feature: domain Description: DUF938 Location: 2120060-2120654 bp Feature: domain Description: DUF938 Location: 21 20060-21 20654 bp Feature: gene Location: 2120965-2121444 bp Ori: SOD25646.1 Feature: domain Description: Tae4 Location: 2121043-2121433 bp Feature: domain Description: Tae4 Location: 21 21 043-21 21 433 bp Feature: gene Location: 4722380-4725562 bp Ori: SOD28871.1 Feature: domain Description: HEAT_2 Location: 4722749-4722959 bp Feature: domain Description: HEAT_2 Location: 4722749-4722959 bp Feature: domain Description: HEAT_2 Location: 4723940-4724159 bp Feature: domain Description: HEAT_2 Location: 4723940-47241 59 bp Feature: domain Description: HEAT_2 Location: 4724309-4724483 bp Feature: domain Description: HEAT_2 Location: 4724309-4724483 bp Feature: gene Location: 4725559-4727244 bp Feature: gene Location: 4727530-4729467 bp Ori: SOD28873.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4728109-4728727 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47281 09-4728727 bp Feature: gene Location: 4729777-4730853 bp Ori: SOD28874.1 Feature: domain Description: Acetyltransf_1 Location: 4729897-4730221 bp Feature: domain Description: Acetyltransf_1 Location: 4729897-4730221 bp Feature: domain Description: Acetyltransf_1 Location: 4730473-4730701 bp Feature: domain Description: Acetyltransf_1 Location: 4730473-4730701 bp Feature: gene Location: 4730850-4731701 bp Ori: SOD28875.1 Feature: domain Description: RIO1 Location: 4730865-4731672 bp Feature: domain Description: RIO1 Location: 4730865-4731 672 bp Feature: gene Location: 5513355-5513840 bp Feature: gene Location: 5513857-5514705 bp Ori: SOD29631.1 Feature: domain Description: trp_2_3_diox Location: 5513914-5514703 bp Feature: domain Description: trp_2_3_diox Location: 551 391 4-551 4703 bp Feature: gene Location: 5514947-5516332 bp Ori: SOD29632.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5515445-5516081 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 551 5445-551 6081 bp Feature: gene Location: 5516403-5517653 bp Feature: gene Location: 5517676-5518860 bp Ori: SOD29634.1 Feature: domain Description: PRK08163 Location: 5517688-5518810 bp Feature: domain Description: PRK081 63 Location: 551 7688-551 881 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), dnaG (TIGR01391), RVT-UG10, DUF938 (pfam06080), Tae4 (pfam14113), HEAT_2 (pfam13646), RVT-Retrons, Acetyltransf_1 (pfam00583), RIO1 (pfam01163), trp_2_3_diox (TIGR03036)
PRK08163 (3-hydroxybenzoate 6-monooxygenase)