myRT

myRT report for GCA_900230185.1_IMG-taxon_2711768632_annotated_assembly

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Seq: OCSR01000002.1 (4486313 bp)
Overview 1 RT 1: 1884986-1888374 bp 2 RT 2: 2041351-2044326 bp 3 RT 3: 3276871-3281191 bp Neighborhood of RT #1 [1884986, 1888374] DUF5372 RVT-GII GIIM COG3666 DDE_Tnp_1_6 Neighborhood of RT #2 [2041351, 2044326] RVT-GII PRK12939 Neighborhood of RT #3 [3276871, 3281191] IclR MFS_ShiA_like RVT-GII GIIM DUF5372 Feature: gene Location: 1884986-1885510 bp Feature: domain Description: DUF5372 Location: 1885247-1885478 bp Feature: domain Description: DUF5372 Location: 1 885247-1 885478 bp Feature: gene Location: 1885204-1885446 bp Feature: gene Location: 1885285-1886259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1885300-1885894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 885300-1 885894 bp Feature: domain Description: GIIM Note: maturase Location: 1885945-1886158 bp Feature: domain Description: GIIM Note: maturase Location: 1 885945-1 8861 58 bp Feature: gene Location: 1886480-1887874 bp Feature: domain Description: COG3666 Location: 1886522-1886945 bp Feature: domain Description: COG3666 Location: 1 886522-1 886945 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1887470-1887845 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 887470-1 887845 bp Feature: gene Location: 1888036-1888374 bp Feature: gene Location: 2041351-2041899 bp Feature: gene Location: 2041933-2042241 bp Feature: gene Location: 2042323-2042589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2042365-2042554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2042365-2042554 bp Feature: gene Location: 2042963-2043718 bp Feature: domain Description: PRK12939 Location: 2042969-2043710 bp Feature: domain Description: PRK1 2939 Location: 2042969-204371 0 bp Feature: gene Location: 2043988-2044326 bp Feature: gene Location: 3276871-3277719 bp Feature: domain Description: IclR Location: 3276910-3277648 bp Feature: domain Description: IclR Location: 327691 0-3277648 bp Feature: gene Location: 3277912-3279333 bp Feature: domain Description: MFS_ShiA_like Location: 3277981-3279196 bp Feature: domain Description: MFS_ShiA_like Location: 3277981 -32791 96 bp Feature: gene Location: 3279533-3280507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3279548-3280142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3279548-32801 42 bp Feature: domain Description: GIIM Note: maturase Location: 3280193-3280406 bp Feature: domain Description: GIIM Note: maturase Location: 32801 93-3280406 bp Feature: gene Location: 3280282-3280806 bp Feature: domain Description: DUF5372 Location: 3280543-3280774 bp Feature: domain Description: DUF5372 Location: 3280543-3280774 bp Feature: gene Location: 3280859-3281191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), PRK12939 (short chain dehydrogenase; Provisional), IclR (pfam01614), MFS_ShiA_like (cd17369)

Seq: OCSR01000001.1 (6008487 bp)
Overview 1 RT 1: 44624-54012 bp 2 RT 2: 358401-365003 bp 3 RT 3: 592416-596065 bp 4 RT 4: 599128-605103 bp 5 RT 5: 1109427-1114887 bp 6 RT 6: 1341741-1349116 bp 7 RT 7: 1584780-1589907 bp 8 RT 8: 1708220-1714739 bp 9 RT 9: 1803252-1809205 bp 10 RT 10: 1915931-1923698 bp 11 RT 11: 2874334-2884173 bp 12 RT 12: 3040802-3045830 bp 13 RT 13: 3362587-3368738 bp 14 RT 14: 3416508-3423043 bp 15 RT 15: 3688085-3693287 bp 16 RT 16: 3921578-3927098 bp 17 RT 17: 4206176-4211855 bp 18 RT 18: 4566750-4575044 bp 19 RT 19: 5646873-5650823 bp 20 RT 20: 5715433-5723865 bp 21 RT 21: 5885625-5892956 bp 22 RT 22: 5973137-5977556 bp Neighborhood of RT #1 [44624, 54083] STKc_PknB_like COG3899 FhlA BaeS DMT_YdcZ RVT-GII GIIM LysR Neighborhood of RT #2 [358401, 365188] DadA Acetyltransf_1 Acetyltransf_18 RVT_N RVT-GII rve PRK08181 Neighborhood of RT #3 [592416, 596082] COG3945 RVT-GII GIIM HU Neighborhood of RT #4 [599128, 605103] Relaxase PRK13878 PRK13878 RVT-GII GIIM RVT-GII MobC Neighborhood of RT #5 [1109427, 1114887] LldP RhaT RVT-GII GIIM Neighborhood of RT #6 [1341741, 1349133] pgsA uvrC RVT_N RVT-GII GIIM HNHc EarP Neighborhood of RT #7 [1584780, 1589907] DPM1_like_bac GT87 RVT-GII GIIM Neighborhood of RT #8 [1708220, 1714753] RpsT DUF3579 RVT_N RVT-GII GIIM HNHc PRK00779 PLN00200 Neighborhood of RT #9 [1803252, 1809210] moaC PglL_A Wzy_C Wzy_C_2 RVT_N RVT-GII YkfC HNH N_methyl Pilin Neighborhood of RT #10 [1915931, 1923709] Barstar RNase_Sa RVT_N RVT-GII GIIM HNHc PRK12861 PRK05731 Neighborhood of RT #11 [2874334, 2884190] YncE beta_rpt_yvtn YncE AcpA AcpA RhaT RVT-GII GIIM RVT-GII GIIM BLMA_like CHAD DLH Neighborhood of RT #12 [3040802, 3045898] PRK05428 nitro_reg_IIA RVT_N RVT-GII GIIM HNHc RaiA Neighborhood of RT #13 [3362587, 3368770] Rve RVT-GII GIIM COG5659 RVT-GII Rve gluta_reduc_2 Neighborhood of RT #14 [3416508, 3423048] Rve RVT-GII GIIM RVT-GII GIIM Rve PRK07657 Neighborhood of RT #15 [3688085, 3693295] tonB_Cterm RVT-GII GIIM PRK00855 HTH_31 MLTR_LBD Neighborhood of RT #16 [3921578, 3927154] PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 PssA Neighborhood of RT #17 [4206176, 4211983] IclR RVT-GII GIIM MFS_SV2_like LysR Neighborhood of RT #18 [4566750, 4575055] ArnT Xcc1710_like RVT_N RVT-GII GIIM HNHc PRK09265 PRK06349 Neighborhood of RT #19 [5646873, 5650823] MhpC LysR RVT-GII GIIM PBP2_LrhA_like Neighborhood of RT #20 [5715433, 5723987] Rve RVT-GII IS5 RVT-GII GIIM RVT-GII GIIM DDE_Tnp_IS240 DUF772 DDE_Tnp_1 Neighborhood of RT #21 [5885625, 5893111] mdcA Rve RVT-GII GIIM RVT-GII GIIM Rve DUF4148 Neighborhood of RT #22 [5973137, 5977600] MsrA RVT-GII GIIM gram_neg_porins COG5659 Feature: gene Location: 44624-50116 bp Feature: domain Description: STKc_PknB_like Location: 44756-45428 bp Feature: domain Description: STKc_PknB_like Location: 44756-4542 8 bp Feature: domain Description: COG3899 Location: 45521-47729 bp Feature: domain Description: COG3899 Location: 4552 1-4772 9 bp Feature: domain Description: FhlA Location: 48302-49049 bp Feature: domain Description: FhlA Location: 48302 -49049 bp Feature: domain Description: BaeS Location: 49280-50102 bp Feature: domain Description: BaeS Location: 492 80-50102 bp Feature: gene Location: 50295-50735 bp Feature: domain Description: DMT_YdcZ Location: 50325-50724 bp Feature: domain Description: DMT_YdcZ Location: 5032 5-5072 4 bp Feature: gene Location: 51285-52589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51570-52209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51570-52 2 09 bp Feature: domain Description: GIIM Note: maturase Location: 52284-52503 bp Feature: domain Description: GIIM Note: maturase Location: 52 2 84-52 503 bp Feature: gene Location: 52679-52837 bp Feature: gene Location: 53124-54083 bp Feature: domain Description: LysR Location: 53145-54012 bp Feature: domain Description: LysR Location: 53145-54012 bp Feature: gene Location: 358401-359600 bp Feature: domain Description: DadA Location: 358407-359595 bp Feature: domain Description: DadA Location: 358407-359595 bp Feature: gene Location: 360276-361178 bp Feature: domain Description: Acetyltransf_1 Location: 360384-360657 bp Feature: domain Description: Acetyltransf_1 Location: 360384-360657 bp Feature: domain Description: Acetyltransf_18 Location: 360777-361110 bp Feature: domain Description: Acetyltransf_18 Location: 360777-361110 bp Feature: gene Location: 361887-363014 bp Feature: domain Description: RVT_N Location: 362106-362349 bp Feature: domain Description: RVT_N Location: 362 106-362 349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362394-362988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362 394-362 988 bp Feature: gene Location: 363129-364673 bp Feature: domain Description: rve Location: 363543-363933 bp Feature: domain Description: rve Location: 363543-363933 bp Feature: gene Location: 364670-365188 bp Feature: domain Description: PRK08181 Location: 364679-365003 bp Feature: domain Description: PRK08181 Location: 364679-365003 bp Feature: gene Location: 592416-592742 bp Feature: gene Location: 592844-593440 bp Feature: domain Description: COG3945 Location: 592889-593387 bp Feature: domain Description: COG3945 Location: 592 889-593387 bp Feature: gene Location: 593710-594981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593995-594616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593995-594616 bp Feature: domain Description: GIIM Note: maturase Location: 594667-594880 bp Feature: domain Description: GIIM Note: maturase Location: 594667-594880 bp Feature: gene Location: 595396-595602 bp Feature: gene Location: 595804-596082 bp Feature: domain Description: HU Location: 595810-596065 bp Feature: domain Description: HU Location: 595810-596065 bp Feature: gene Location: 599128-602382 bp Feature: domain Description: Relaxase Location: 599290-599680 bp Feature: domain Description: Relaxase Location: 5992 90-599680 bp Feature: domain Description: PRK13878 Location: 600178-600598 bp Feature: domain Description: PRK13878 Location: 600178-600598 bp Feature: domain Description: PRK13878 Location: 601429-602257 bp Feature: domain Description: PRK13878 Location: 60142 9-602 2 57 bp Feature: gene Location: 602387-602614 bp Feature: gene Location: 602703-603365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602709-602982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602 709-602 982 bp Feature: domain Description: GIIM Note: maturase Location: 603060-603285 bp Feature: domain Description: GIIM Note: maturase Location: 603060-6032 85 bp Feature: gene Location: 603372-603947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603576-603945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603576-603945 bp Feature: gene Location: 604481-604846 bp Feature: domain Description: MobC Location: 604700-604820 bp Feature: domain Description: MobC Location: 604700-60482 0 bp Feature: gene Location: 604846-605103 bp Feature: gene Location: 1109427-1111025 bp Feature: domain Description: LldP Location: 1109466-1111005 bp Feature: domain Description: LldP Location: 1109466-1111005 bp Feature: gene Location: 1111337-1112305 bp Feature: domain Description: RhaT Location: 1111382-1112255 bp Feature: domain Description: RhaT Location: 1111382 -1112 2 55 bp Feature: gene Location: 1112415-1113785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112742-1113363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112 742 -1113363 bp Feature: domain Description: GIIM Note: maturase Location: 1113414-1113624 bp Feature: domain Description: GIIM Note: maturase Location: 1113414-111362 4 bp Feature: gene Location: 1113837-1114013 bp Feature: gene Location: 1114615-1114887 bp Feature: gene Location: 1341741-1342334 bp Feature: domain Description: pgsA Location: 1341750-1342311 bp Feature: domain Description: pgsA Location: 1341750-1342 311 bp Feature: gene Location: 1342534-1344744 bp Feature: domain Description: uvrC Location: 1342573-1344742 bp Feature: domain Description: uvrC Location: 1342 573-1344742 bp Feature: gene Location: 1344936-1346636 bp Feature: domain Description: RVT_N Location: 1344993-1345236 bp Feature: domain Description: RVT_N Location: 1344993-13452 36 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1345281-1345929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13452 81-134592 9 bp Feature: domain Description: GIIM Note: maturase Location: 1345983-1346214 bp Feature: domain Description: GIIM Note: maturase Location: 1345983-13462 14 bp Feature: domain Description: HNHc Note: nucleases Location: 1346445-1346598 bp Feature: domain Description: HNHc Note: nucleases Location: 1346445-1346598 bp Feature: gene Location: 1347776-1347922 bp Feature: gene Location: 1347940-1349133 bp Feature: domain Description: EarP Location: 1348000-1349116 bp Feature: domain Description: EarP Location: 1348000-1349116 bp Feature: gene Location: 1584780-1585829 bp Feature: domain Description: DPM1_like_bac Location: 1584816-1585362 bp Feature: domain Description: DPM1_like_bac Location: 1584816-1585362 bp Feature: gene Location: 1585935-1586903 bp Feature: domain Description: GT87 Location: 1585974-1586640 bp Feature: domain Description: GT87 Location: 1585974-1586640 bp Feature: gene Location: 1587188-1588453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1587437-1588100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1587437-1588100 bp Feature: domain Description: GIIM Note: maturase Location: 1588169-1588385 bp Feature: domain Description: GIIM Note: maturase Location: 1588169-1588385 bp Feature: gene Location: 1588688-1589272 bp Feature: gene Location: 1589614-1589907 bp Feature: gene Location: 1708220-1708498 bp Feature: domain Description: RpsT Location: 1708223-1708481 bp Feature: domain Description: RpsT Location: 17082 2 3-1708481 bp Feature: gene Location: 1708740-1709087 bp Feature: domain Description: DUF3579 Location: 1708761-1709031 bp Feature: domain Description: DUF3579 Location: 1708761-1709031 bp Feature: gene Location: 1710492-1712192 bp Feature: domain Description: RVT_N Location: 1710549-1710792 bp Feature: domain Description: RVT_N Location: 1710549-1710792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710837-1711485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710837-1711485 bp Feature: domain Description: GIIM Note: maturase Location: 1711539-1711770 bp Feature: domain Description: GIIM Note: maturase Location: 1711539-1711770 bp Feature: domain Description: HNHc Note: nucleases Location: 1712001-1712154 bp Feature: domain Description: HNHc Note: nucleases Location: 1712 001-1712 154 bp Feature: gene Location: 1712351-1713280 bp Feature: domain Description: PRK00779 Location: 1712366-1713260 bp Feature: domain Description: PRK00779 Location: 1712 366-17132 60 bp Feature: gene Location: 1713527-1714753 bp Feature: domain Description: PLN00200 Location: 1713536-1714739 bp Feature: domain Description: PLN002 00 Location: 1713536-1714739 bp Feature: gene Location: 1803252-1803728 bp Feature: domain Description: moaC Location: 1803258-1803720 bp Feature: domain Description: moaC Location: 18032 58-180372 0 bp Feature: gene Location: 1803831-1805615 bp Feature: domain Description: PglL_A Location: 1804338-1804410 bp Feature: domain Description: PglL_A Location: 1804338-1804410 bp Feature: domain Description: Wzy_C Location: 1804461-1804920 bp Feature: domain Description: Wzy_C Location: 1804461-180492 0 bp Feature: domain Description: Wzy_C_2 Location: 1804986-1805490 bp Feature: domain Description: Wzy_C_2 Location: 1804986-1805490 bp Feature: gene Location: 1805742-1807448 bp Feature: domain Description: RVT_N Location: 1805799-1806042 bp Feature: domain Description: RVT_N Location: 1805799-1806042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1806087-1806735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1806087-1806735 bp Feature: domain Description: YkfC Location: 1806873-1807083 bp Feature: domain Description: YkfC Location: 1806873-1807083 bp Feature: domain Description: HNH Note: nucleases Location: 1807272-1807404 bp Feature: domain Description: HNH Note: nucleases Location: 18072 72 -1807404 bp Feature: gene Location: 1807888-1808385 bp Feature: gene Location: 1808587-1809210 bp Feature: domain Description: N_methyl Location: 1808704-1808767 bp Feature: domain Description: N_methyl Location: 1808704-1808767 bp Feature: domain Description: Pilin Location: 1808794-1809205 bp Feature: domain Description: Pilin Location: 1808794-18092 05 bp Feature: gene Location: 1915931-1916500 bp Feature: domain Description: Barstar Location: 1916219-1916465 bp Feature: domain Description: Barstar Location: 19162 19-1916465 bp Feature: gene Location: 1916508-1916924 bp Feature: domain Description: RNase_Sa Location: 1916640-1916916 bp Feature: domain Description: RNase_Sa Location: 1916640-1916916 bp Feature: gene Location: 1917064-1918665 bp Feature: domain Description: RVT_N Location: 1917067-1917265 bp Feature: domain Description: RVT_N Location: 1917067-19172 65 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917310-1917958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917310-1917958 bp Feature: domain Description: GIIM Note: maturase Location: 1918009-1918243 bp Feature: domain Description: GIIM Note: maturase Location: 1918009-19182 43 bp Feature: domain Description: HNHc Note: nucleases Location: 1918474-1918627 bp Feature: domain Description: HNHc Note: nucleases Location: 1918474-191862 7 bp Feature: gene Location: 1920164-1922695 bp Feature: domain Description: PRK12861 Location: 1920419-1922687 bp Feature: domain Description: PRK12 861 Location: 192 0419-192 2 687 bp Feature: gene Location: 1922711-1923709 bp Feature: domain Description: PRK05731 Location: 1922717-1923698 bp Feature: domain Description: PRK05731 Location: 192 2 717-192 3698 bp Feature: gene Location: 2874334-2877219 bp Feature: domain Description: YncE Location: 2874568-2874820 bp Feature: domain Description: YncE Location: 2 874568-2 87482 0 bp Feature: domain Description: beta_rpt_yvtn Location: 2874934-2875006 bp Feature: domain Description: beta_rpt_yvtn Location: 2 874934-2 875006 bp Feature: domain Description: YncE Location: 2875180-2875567 bp Feature: domain Description: YncE Location: 2 875180-2 875567 bp Feature: domain Description: AcpA Location: 2875804-2876239 bp Feature: domain Description: AcpA Location: 2 875804-2 8762 39 bp Feature: domain Description: AcpA Location: 2876512-2876875 bp Feature: domain Description: AcpA Location: 2 876512 -2 876875 bp Feature: gene Location: 2877670-2878449 bp Feature: domain Description: RhaT Location: 2877832-2878243 bp Feature: domain Description: RhaT Location: 2 877832 -2 8782 43 bp Feature: gene Location: 2878807-2880117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2879098-2879761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 879098-2 879761 bp Feature: domain Description: GIIM Note: maturase Location: 2879830-2880046 bp Feature: domain Description: GIIM Note: maturase Location: 2 879830-2 880046 bp Feature: gene Location: 2880699-2882003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880984-2881623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 880984-2 88162 3 bp Feature: domain Description: GIIM Note: maturase Location: 2881698-2881917 bp Feature: domain Description: GIIM Note: maturase Location: 2 881698-2 881917 bp Feature: gene Location: 2882379-2883146 bp Feature: domain Description: BLMA_like Location: 2882403-2882676 bp Feature: domain Description: BLMA_like Location: 2 882 403-2 882 676 bp Feature: domain Description: CHAD Location: 2882718-2883075 bp Feature: domain Description: CHAD Location: 2 882 718-2 883075 bp Feature: gene Location: 2883183-2884190 bp Feature: domain Description: DLH Location: 2883402-2884173 bp Feature: domain Description: DLH Location: 2 883402 -2 884173 bp Feature: gene Location: 3040802-3041770 bp Feature: domain Description: PRK05428 Location: 3040814-3041741 bp Feature: domain Description: PRK0542 8 Location: 3040814-3041741 bp Feature: gene Location: 3041911-3042366 bp Feature: domain Description: nitro_reg_IIA Location: 3041923-3042352 bp Feature: domain Description: nitro_reg_IIA Location: 304192 3-3042 352 bp Feature: gene Location: 3042616-3044217 bp Feature: domain Description: RVT_N Location: 3042619-3042817 bp Feature: domain Description: RVT_N Location: 3042 619-3042 817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042862-3043510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042 862 -3043510 bp Feature: domain Description: GIIM Note: maturase Location: 3043564-3043795 bp Feature: domain Description: GIIM Note: maturase Location: 3043564-3043795 bp Feature: domain Description: HNHc Note: nucleases Location: 3044026-3044179 bp Feature: domain Description: HNHc Note: nucleases Location: 304402 6-3044179 bp Feature: gene Location: 3045376-3045522 bp Feature: gene Location: 3045542-3045898 bp Feature: domain Description: RaiA Location: 3045548-3045830 bp Feature: domain Description: RaiA Location: 3045548-3045830 bp Feature: gene Location: 3362587-3362820 bp Feature: gene Location: 3363397-3363687 bp Feature: domain Description: Rve Location: 3363403-3363649 bp Feature: domain Description: Rve Location: 3363403-3363649 bp Feature: gene Location: 3363894-3364583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363897-3364041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363897-3364041 bp Feature: domain Description: GIIM Note: maturase Location: 3364152-3364314 bp Feature: domain Description: GIIM Note: maturase Location: 3364152 -3364314 bp Feature: gene Location: 3364757-3366073 bp Feature: domain Description: COG5659 Location: 3364775-3366035 bp Feature: domain Description: COG5659 Location: 3364775-3366035 bp Feature: gene Location: 3366099-3366950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366372-3366855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366372 -3366855 bp Feature: gene Location: 3367577-3367876 bp Feature: domain Description: Rve Location: 3367616-3367841 bp Feature: domain Description: Rve Location: 3367616-3367841 bp Feature: gene Location: 3368027-3368770 bp Feature: domain Description: gluta_reduc_2 Location: 3368060-3368738 bp Feature: domain Description: gluta_reduc_2 Location: 3368060-3368738 bp Feature: gene Location: 3416508-3416954 bp Feature: gene Location: 3417039-3417230 bp Feature: domain Description: Rve Location: 3417081-3417198 bp Feature: domain Description: Rve Location: 3417081-3417198 bp Feature: gene Location: 3417963-3419516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3418236-3418974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34182 36-3418974 bp Feature: domain Description: GIIM Note: maturase Location: 3419067-3419247 bp Feature: domain Description: GIIM Note: maturase Location: 3419067-34192 47 bp Feature: gene Location: 3420049-3421353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3420334-3420973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 0334-342 0973 bp Feature: domain Description: GIIM Note: maturase Location: 3421048-3421267 bp Feature: domain Description: GIIM Note: maturase Location: 342 1048-342 12 67 bp Feature: gene Location: 3421701-3421964 bp Feature: domain Description: Rve Location: 3421731-3421908 bp Feature: domain Description: Rve Location: 342 1731-342 1908 bp Feature: gene Location: 3422164-3423048 bp Feature: domain Description: PRK07657 Location: 3422275-3423043 bp Feature: domain Description: PRK07657 Location: 342 2 2 75-342 3043 bp Feature: gene Location: 3688085-3688651 bp Feature: domain Description: tonB_Cterm Location: 3688403-3688538 bp Feature: domain Description: tonB_Cterm Location: 3688403-3688538 bp Feature: gene Location: 3689037-3689213 bp Feature: gene Location: 3689265-3690635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3689592-3690213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3689592 -36902 13 bp Feature: domain Description: GIIM Note: maturase Location: 3690264-3690474 bp Feature: domain Description: GIIM Note: maturase Location: 36902 64-3690474 bp Feature: gene Location: 3690896-3692302 bp Feature: domain Description: PRK00855 Location: 3690917-3692297 bp Feature: domain Description: PRK00855 Location: 3690917-3692 2 97 bp Feature: gene Location: 3692483-3693295 bp Feature: domain Description: HTH_31 Location: 3692543-3692780 bp Feature: domain Description: HTH_31 Location: 3692 543-3692 780 bp Feature: domain Description: MLTR_LBD Location: 3692864-3693287 bp Feature: domain Description: MLTR_LBD Location: 3692 864-36932 87 bp Feature: gene Location: 3921578-3922594 bp Feature: domain Description: PRK05479 Location: 3921581-3922562 bp Feature: domain Description: PRK05479 Location: 392 1581-392 2 562 bp Feature: gene Location: 3922873-3923013 bp Feature: gene Location: 3923804-3925504 bp Feature: domain Description: RVT_N Location: 3923861-3924104 bp Feature: domain Description: RVT_N Location: 392 3861-392 4104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3924149-3924797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 4149-392 4797 bp Feature: domain Description: GIIM Note: maturase Location: 3924848-3925082 bp Feature: domain Description: GIIM Note: maturase Location: 392 4848-392 5082 bp Feature: domain Description: HNHc Note: nucleases Location: 3925325-3925466 bp Feature: domain Description: HNHc Note: nucleases Location: 392 532 5-392 5466 bp Feature: gene Location: 3925622-3926260 bp Feature: domain Description: PRK05305 Location: 3925646-3926255 bp Feature: domain Description: PRK05305 Location: 392 5646-392 62 55 bp Feature: gene Location: 3926285-3927154 bp Feature: domain Description: PssA Location: 3926417-3927098 bp Feature: domain Description: PssA Location: 392 6417-392 7098 bp Feature: gene Location: 4206176-4207012 bp Feature: domain Description: IclR Location: 4206254-4206980 bp Feature: domain Description: IclR Location: 42 062 54-42 06980 bp Feature: gene Location: 4207639-4207815 bp Feature: gene Location: 4207867-4209237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4208194-4208815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 08194-42 08815 bp Feature: domain Description: GIIM Note: maturase Location: 4208866-4209076 bp Feature: domain Description: GIIM Note: maturase Location: 42 08866-42 09076 bp Feature: gene Location: 4209536-4210933 bp Feature: domain Description: MFS_SV2_like Location: 4209599-4210784 bp Feature: domain Description: MFS_SV2 _like Location: 42 09599-42 10784 bp Feature: gene Location: 4211000-4211983 bp Feature: domain Description: LysR Location: 4211021-4211855 bp Feature: domain Description: LysR Location: 42 1102 1-42 11855 bp Feature: gene Location: 4566750-4568471 bp Feature: domain Description: ArnT Location: 4566774-4568403 bp Feature: domain Description: ArnT Location: 4566774-4568403 bp Feature: gene Location: 4568683-4569198 bp Feature: domain Description: Xcc1710_like Location: 4568863-4569187 bp Feature: domain Description: Xcc1710_like Location: 4568863-4569187 bp Feature: gene Location: 4570242-4571942 bp Feature: domain Description: RVT_N Location: 4570299-4570542 bp Feature: domain Description: RVT_N Location: 45702 99-4570542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4570587-4571235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4570587-45712 35 bp Feature: domain Description: GIIM Note: maturase Location: 4571289-4571520 bp Feature: domain Description: GIIM Note: maturase Location: 45712 89-457152 0 bp Feature: domain Description: HNHc Note: nucleases Location: 4571745-4571904 bp Feature: domain Description: HNHc Note: nucleases Location: 4571745-4571904 bp Feature: gene Location: 4572370-4573647 bp Feature: domain Description: PRK09265 Location: 4572415-4573633 bp Feature: domain Description: PRK092 65 Location: 4572 415-4573633 bp Feature: gene Location: 4573649-4575055 bp Feature: domain Description: PRK06349 Location: 4573727-4575044 bp Feature: domain Description: PRK06349 Location: 457372 7-4575044 bp Feature: gene Location: 5646873-5647727 bp Feature: domain Description: MhpC Location: 5646954-5647722 bp Feature: domain Description: MhpC Location: 5646954-564772 2 bp Feature: gene Location: 5647817-5648245 bp Feature: domain Description: LysR Location: 5647829-5648216 bp Feature: domain Description: LysR Location: 564782 9-56482 16 bp Feature: gene Location: 5648314-5649558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5648518-5649175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5648518-5649175 bp Feature: domain Description: GIIM Note: maturase Location: 5649253-5649478 bp Feature: domain Description: GIIM Note: maturase Location: 56492 53-5649478 bp Feature: gene Location: 5649942-5650523 bp Feature: domain Description: PBP2_LrhA_like Location: 5650086-5650491 bp Feature: domain Description: PBP2 _LrhA_like Location: 5650086-5650491 bp Feature: gene Location: 5650566-5650823 bp Feature: gene Location: 5715433-5715924 bp Feature: gene Location: 5715911-5716207 bp Feature: domain Description: Rve Location: 5715953-5716169 bp Feature: domain Description: Rve Location: 5715953-5716169 bp Feature: gene Location: 5716869-5717435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5717106-5717388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5717106-5717388 bp Feature: gene Location: 5717432-5718409 bp Feature: domain Description: IS5 Location: 5717633-5718392 bp Feature: domain Description: IS5 Location: 5717633-5718392 bp Feature: gene Location: 5718419-5719555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5718548-5719013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5718548-5719013 bp Feature: domain Description: GIIM Note: maturase Location: 5719124-5719286 bp Feature: domain Description: GIIM Note: maturase Location: 571912 4-57192 86 bp Feature: gene Location: 5720088-5721392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5720373-5721012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572 0373-572 1012 bp Feature: domain Description: GIIM Note: maturase Location: 5721087-5721306 bp Feature: domain Description: GIIM Note: maturase Location: 572 1087-572 1306 bp Feature: gene Location: 5721692-5722084 bp Feature: domain Description: DDE_Tnp_IS240 Location: 5721695-5722010 bp Feature: domain Description: DDE_Tnp_IS2 40 Location: 572 1695-572 2 010 bp Feature: gene Location: 5722551-5723987 bp Feature: domain Description: DUF772 Location: 5722767-5722989 bp Feature: domain Description: DUF772 Location: 572 2 767-572 2 989 bp Feature: domain Description: DDE_Tnp_1 Location: 5723442-5723865 bp Feature: domain Description: DDE_Tnp_1 Location: 572 3442 -572 3865 bp Feature: gene Location: 5885625-5887280 bp Feature: domain Description: mdcA Location: 5885652-5887278 bp Feature: domain Description: mdcA Location: 5885652 -58872 78 bp Feature: gene Location: 5887610-5887981 bp Feature: domain Description: Rve Location: 5887613-5887949 bp Feature: domain Description: Rve Location: 5887613-5887949 bp Feature: gene Location: 5888281-5889585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5888566-5889205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5888566-58892 05 bp Feature: domain Description: GIIM Note: maturase Location: 5889280-5889499 bp Feature: domain Description: GIIM Note: maturase Location: 58892 80-5889499 bp Feature: gene Location: 5890118-5891635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5890355-5891093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5890355-5891093 bp Feature: domain Description: GIIM Note: maturase Location: 5891204-5891366 bp Feature: domain Description: GIIM Note: maturase Location: 58912 04-5891366 bp Feature: gene Location: 5892297-5892596 bp Feature: domain Description: Rve Location: 5892336-5892558 bp Feature: domain Description: Rve Location: 5892 336-5892 558 bp Feature: gene Location: 5892791-5893111 bp Feature: domain Description: DUF4148 Location: 5892794-5892956 bp Feature: domain Description: DUF4148 Location: 5892 794-5892 956 bp Feature: gene Location: 5973137-5973496 bp Feature: domain Description: MsrA Location: 5973185-5973488 bp Feature: domain Description: MsrA Location: 5973185-5973488 bp Feature: gene Location: 5973843-5974019 bp Feature: gene Location: 5974071-5975441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5974398-5975019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5974398-5975019 bp Feature: domain Description: GIIM Note: maturase Location: 5975070-5975280 bp Feature: domain Description: GIIM Note: maturase Location: 5975070-59752 80 bp Feature: gene Location: 5975566-5976720 bp Feature: domain Description: gram_neg_porins Location: 5975635-5976718 bp Feature: domain Description: gram_neg_porins Location: 5975635-5976718 bp Feature: gene Location: 5976926-5977600 bp Feature: domain Description: COG5659 Location: 5976932-5977556 bp Feature: domain Description: COG5659 Location: 5976932 -5977556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), COG3899 (Predicted ATPase ), FhlA (COG3604), BaeS (COG0642), DMT_YdcZ (pfam04657), RVT-GII, GIIM (pfam08388), LysR (COG0583), DadA (COG0665), Acetyltransf_1 (pfam00583)
Acetyltransf_18 (pfam18014), RVT_N (pfam13655), rve (pfam00665), PRK08181 (transposase; Validated), COG3945 (Hemerythrin-like domain ), HU (cd13831), Relaxase (pfam03432), PRK13878 (conjugal transfer relaxase TraI; Provisional), MobC (pfam05713), LldP (COG1620)
RhaT (TIGR00776), pgsA (TIGR00560), uvrC (TIGR00194), HNHc (smart00507), EarP (TIGR03837), DPM1_like_bac (cd04187), GT87 (pfam09594), RpsT (COG0268), DUF3579 (pfam12112), PRK00779 (ornithine carbamoyltransferase; Provisional)
PLN00200 (argininosuccinate synthase; Provisional), moaC (TIGR00581), PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), YkfC (COG3344), HNH (pfam01844), N_methyl (pfam07963), Pilin (pfam00114), Barstar (pfam01337)
RNase_Sa (cd00607), PRK12861 (malic enzyme; Reviewed), PRK05731 (thiamine monophosphate kinase; Provisional), YncE (COG3391), beta_rpt_yvtn (TIGR02276), AcpA (cd16013), BLMA_like (cd08349), CHAD (smart00880), DLH (pfam01738), PRK05428 (HPr kinase/phosphorylase; Provisional)
nitro_reg_IIA (TIGR01419), RaiA (COG1544), Rve (COG3316), COG5659 (SRSO17 transposase ), gluta_reduc_2 (TIGR01424), PRK07657 (enoyl-CoA hydratase; Provisional), tonB_Cterm (TIGR01352), PRK00855 (argininosuccinate lyase; Provisional), HTH_31 (pfam13560), MLTR_LBD (pfam17765)
PRK05479 (ketol-acid reductoisomerase; Provisional), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183), IclR (pfam01614), MFS_SV2_like (cd17316), ArnT (COG1807), Xcc1710_like (cd05560), PRK09265 (aminotransferase AlaT; Validated), PRK06349 (homoserine dehydrogenase; Provisional), MhpC (COG0596)
PBP2_LrhA_like (cd08439), IS5 (COG3039), DDE_Tnp_IS240 (pfam13610), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), mdcA (TIGR01110), DUF4148 (pfam13663), MsrA (COG0225), gram_neg_porins (cd00342)

Seq: OCSR01000003.1 (262107 bp)
Overview 1 RT 1: 67562-71872 bp 2 RT 2: 165900-170841 bp 3 RT 3: 182163-188037 bp Neighborhood of RT #1 [67562, 71872] MFS_MJ1317_like PRK11115 RVT-GII GIIM Neighborhood of RT #2 [165900, 171044] RVT-GII GIIM Relaxase PRK13878 LPD7 Neighborhood of RT #3 [182163, 188084] DNA_BRE_C RVT_N RVT-GII GIIM HNH Rve COG3547 Feature: gene Location: 67562-68773 bp Feature: domain Description: MFS_MJ1317_like Location: 67619-68732 bp Feature: domain Description: MFS_MJ13 17_like Location: 67619-6873 2 bp Feature: gene Location: 68932-69639 bp Feature: domain Description: PRK11115 Location: 68941-69622 bp Feature: domain Description: PRK11115 Location: 68941-69622 bp Feature: gene Location: 69955-71325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70282-70903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70282-70903 bp Feature: domain Description: GIIM Note: maturase Location: 70954-71164 bp Feature: domain Description: GIIM Note: maturase Location: 70954-71164 bp Feature: gene Location: 71377-71553 bp Feature: gene Location: 71681-71872 bp Feature: gene Location: 165900-166040 bp Feature: gene Location: 166104-166253 bp Feature: gene Location: 166255-167499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166459-167116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166459-167116 bp Feature: domain Description: GIIM Note: maturase Location: 167194-167419 bp Feature: domain Description: GIIM Note: maturase Location: 167194-167419 bp Feature: gene Location: 167510-167815 bp Feature: gene Location: 167820-171044 bp Feature: domain Description: Relaxase Location: 167982-168537 bp Feature: domain Description: Relaxase Location: 167982-16853 7 bp Feature: domain Description: PRK13878 Location: 169056-169269 bp Feature: domain Description: PRK13 878 Location: 169056-169269 bp Feature: domain Description: LPD7 Location: 170580-170841 bp Feature: domain Description: LPD7 Location: 170580-170841 bp Feature: gene Location: 182163-183425 bp Feature: domain Description: DNA_BRE_C Location: 182733-183360 bp Feature: domain Description: DNA_BRE_C Location: 18273 3 -183 3 60 bp Feature: gene Location: 183447-183590 bp Feature: gene Location: 183744-185396 bp Feature: domain Description: RVT_N Location: 183789-184032 bp Feature: domain Description: RVT_N Location: 183 789-18403 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184077-184713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184077-184713 bp Feature: domain Description: GIIM Note: maturase Location: 184764-184998 bp Feature: domain Description: GIIM Note: maturase Location: 184764-184998 bp Feature: domain Description: HNH Note: nucleases Location: 185250-185367 bp Feature: domain Description: HNH Note: nucleases Location: 185250-1853 67 bp Feature: gene Location: 185879-186439 bp Feature: domain Description: Rve Location: 185990-186359 bp Feature: domain Description: Rve Location: 185990-1863 59 bp Feature: gene Location: 187032-188084 bp Feature: domain Description: COG3547 Location: 187086-188037 bp Feature: domain Description: COG3 547 Location: 187086-18803 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MJ1317_like (cd17370), PRK11115 (phosphate signaling complex protein PhoU), RVT-GII, GIIM (pfam08388), Relaxase (pfam03432), PRK13878 (conjugal transfer relaxase TraI; Provisional), LPD7 (pfam18821), DNA_BRE_C (cl00213), RVT_N (pfam13655), HNH (pfam01844)
Rve (COG3316), COG3547 (Transposase )