myRT

myRT report for GCA_900230245.1_IMG-taxon_2711768653_annotated_assembly

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Seq: OCSU01000001.1 (3535244 bp)
Overview 1 RT 1: 3633-6893 bp 2 RT 2: 552600-557954 bp 3 RT 3: 631422-635768 bp 4 RT 4: 676634-682819 bp 5 RT 5: 836620-842827 bp 6 RT 6: 882711-887530 bp 7 RT 7: 1166992-1176305 bp 8 RT 8: 1223667-1229147 bp 9 RT 9: 1306089-1311424 bp 10 RT 10: 2522532-2530233 bp 11 RT 11: 2547006-2551932 bp 12 RT 12: 2887672-2892499 bp 13 RT 13: 3379764-3385066 bp 14 RT 14: 3390782-3396579 bp 15 RT 15: 3494505-3498918 bp Neighborhood of RT #1 [3633, 7132] RVT-GII RVT-GII PRK06131 Neighborhood of RT #2 [552600, 557992] ARO8 DUF2970 RVT-GII COG3547 Neighborhood of RT #3 [631422, 635815] tauD Tra8 RVT_N RVT-GII GIIM Tra8 Neighborhood of RT #4 [676634, 682857] MFS_YcxA_like RVT-GII COG3547 Neighborhood of RT #5 [836620, 842827] TIR_2 DUF1566 RVT-GII GIIM DUF4157 Neighborhood of RT #6 [882711, 887661] AraC RVT-GII GIIM HTH_32 DDE_3 Neighborhood of RT #7 [1166992, 1176305] FDH_like_ADH2 COG4420 RVT_N RVT-GII GIIM HNH HTH_Tnp_1 PHA02517 RVT-GII DDE_5 Neighborhood of RT #8 [1223667, 1229147] RVT-GII GIIM Haemagg_act Neighborhood of RT #9 [1306089, 1311441] PRK07533 PRK07058 RVT-GII GIIM PRK07058 PRK08190 Neighborhood of RT #10 [2522532, 2530268] HTH_21 RVT-GII RVT_N RVT-GII YkfC HNH LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #11 [2547006, 2552081] HTH_21 RVT-GII THN_reductase-like_SDR_c KU_like Neighborhood of RT #12 [2887672, 2893122] PHA02517 Tra8 Tra8 Tra8 RVT-GII GIIM DDE_5 Neighborhood of RT #13 [3379764, 3385110] Cep57_CLD_2 HTH_21 RVT-GII Ion_trans_2 Neighborhood of RT #14 [3390782, 3396579] Haemagg_act RVT-GII GIIM Neighborhood of RT #15 [3494505, 3498935] RVT-GII GIIM PRK15059 Feature: gene Location: 3633-3956 bp Feature: gene Location: 4376-4609 bp Feature: gene Location: 4721-5125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4868-5051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4868-5051 bp Feature: gene Location: 5215-5421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5221-5395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5221 -5395 bp Feature: gene Location: 5681-5836 bp Feature: gene Location: 5921-7132 bp Feature: domain Description: PRK06131 Location: 5924-6893 bp Feature: domain Description: PRK061 31 Location: 5924-6893 bp Feature: gene Location: 552600-554012 bp Feature: domain Description: ARO8 Location: 552615-553989 bp Feature: domain Description: ARO8 Location: 55261 5-553989 bp Feature: gene Location: 554092-554295 bp Feature: domain Description: DUF2970 Location: 554101-554266 bp Feature: domain Description: DUF2970 Location: 5541 01 -554266 bp Feature: gene Location: 554508-556016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554934-555624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554934-555624 bp Feature: gene Location: 556500-556877 bp Feature: gene Location: 556916-557992 bp Feature: domain Description: COG3547 Location: 556958-557954 bp Feature: domain Description: COG3547 Location: 556958-557954 bp Feature: gene Location: 631422-632357 bp Feature: domain Description: tauD Location: 631476-632346 bp Feature: domain Description: tauD Location: 631 476-632346 bp Feature: gene Location: 632592-633020 bp Feature: domain Description: Tra8 Location: 632598-632991 bp Feature: domain Description: Tra8 Location: 632598-632991 bp Feature: gene Location: 633136-634638 bp Feature: domain Description: RVT_N Location: 633199-633442 bp Feature: domain Description: RVT_N Location: 6331 99-633442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633487-634129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633487-6341 29 bp Feature: domain Description: GIIM Note: maturase Location: 634180-634414 bp Feature: domain Description: GIIM Note: maturase Location: 6341 80-63441 4 bp Feature: gene Location: 634779-635030 bp Feature: gene Location: 635195-635815 bp Feature: domain Description: Tra8 Location: 635210-635768 bp Feature: domain Description: Tra8 Location: 63521 0-635768 bp Feature: gene Location: 676634-678244 bp Feature: gene Location: 678261-679100 bp Feature: domain Description: MFS_YcxA_like Location: 678315-679074 bp Feature: domain Description: MFS_YcxA_like Location: 67831 5-679074 bp Feature: gene Location: 679373-680881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679799-680489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679799-680489 bp Feature: gene Location: 681365-681742 bp Feature: gene Location: 681781-682857 bp Feature: domain Description: COG3547 Location: 681823-682819 bp Feature: domain Description: COG3547 Location: 681 823-68281 9 bp Feature: gene Location: 836620-837582 bp Feature: domain Description: TIR_2 Location: 836635-837007 bp Feature: domain Description: TIR_2 Location: 836635-837007 bp Feature: domain Description: DUF1566 Location: 837109-837364 bp Feature: domain Description: DUF1 566 Location: 8371 09-837364 bp Feature: gene Location: 837733-837951 bp Feature: gene Location: 838240-839508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838489-839152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838489-8391 52 bp Feature: domain Description: GIIM Note: maturase Location: 839221-839437 bp Feature: domain Description: GIIM Note: maturase Location: 839221 -839437 bp Feature: gene Location: 839913-841853 bp Feature: domain Description: DUF4157 Location: 840339-840567 bp Feature: domain Description: DUF41 57 Location: 840339-840567 bp Feature: gene Location: 841952-842827 bp Feature: gene Location: 882711-883118 bp Feature: gene Location: 883238-884227 bp Feature: domain Description: AraC Location: 883841-884186 bp Feature: domain Description: AraC Location: 883841 -8841 86 bp Feature: gene Location: 884755-886062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885010-885664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88501 0-885664 bp Feature: domain Description: GIIM Note: maturase Location: 885745-885970 bp Feature: domain Description: GIIM Note: maturase Location: 885745-885970 bp Feature: gene Location: 886328-886570 bp Feature: gene Location: 886576-887661 bp Feature: domain Description: HTH_32 Location: 886759-886972 bp Feature: domain Description: HTH_32 Location: 886759-886972 bp Feature: domain Description: DDE_3 Location: 887095-887530 bp Feature: domain Description: DDE_3 Location: 887095-887530 bp Feature: gene Location: 1166992-1167354 bp Feature: domain Description: FDH_like_ADH2 Location: 1166995-1167343 bp Feature: domain Description: FDH_like_ADH2 Location: 1 1 66995-1 1 67343 bp Feature: gene Location: 1167463-1168077 bp Feature: domain Description: COG4420 Location: 1167631-1168021 bp Feature: domain Description: COG4420 Location: 1 1 67631 -1 1 68021 bp Feature: gene Location: 1168637-1170304 bp Feature: domain Description: RVT_N Location: 1168682-1168925 bp Feature: domain Description: RVT_N Location: 1 1 68682-1 1 68925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1168970-1169612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 68970-1 1 6961 2 bp Feature: domain Description: GIIM Note: maturase Location: 1169663-1169897 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 69663-1 1 69897 bp Feature: domain Description: HNH Note: nucleases Location: 1170149-1170272 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 701 49-1 1 70272 bp Feature: gene Location: 1170862-1171698 bp Feature: gene Location: 1171061-1171474 bp Feature: domain Description: HTH_Tnp_1 Location: 1171181-1171334 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 71 1 81 -1 1 71 334 bp Feature: gene Location: 1171471-1172367 bp Feature: domain Description: PHA02517 Location: 1171690-1172353 bp Feature: domain Description: PHA0251 7 Location: 1 1 71 690-1 1 72353 bp Feature: gene Location: 1172776-1174284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1173202-1173892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 73202-1 1 73892 bp Feature: gene Location: 1174532-1175932 bp Feature: domain Description: DDE_5 Location: 1174580-1175309 bp Feature: domain Description: DDE_5 Location: 1 1 74580-1 1 75309 bp Feature: gene Location: 1175988-1176305 bp Feature: gene Location: 1223667-1223882 bp Feature: gene Location: 1224004-1224222 bp Feature: gene Location: 1224679-1225779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224760-1225423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 224760-1 225423 bp Feature: domain Description: GIIM Note: maturase Location: 1225492-1225708 bp Feature: domain Description: GIIM Note: maturase Location: 1 225492-1 225708 bp Feature: gene Location: 1226354-1228660 bp Feature: domain Description: Haemagg_act Location: 1226453-1226777 bp Feature: domain Description: Haemagg_act Location: 1 226453-1 226777 bp Feature: gene Location: 1228941-1229147 bp Feature: gene Location: 1306089-1306862 bp Feature: domain Description: PRK07533 Location: 1306101-1306860 bp Feature: domain Description: PRK07533 Location: 1 3061 01 -1 306860 bp Feature: gene Location: 1306859-1307659 bp Feature: domain Description: PRK07058 Location: 1307081-1307648 bp Feature: domain Description: PRK07058 Location: 1 307081 -1 307648 bp Feature: gene Location: 1307898-1309166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1308147-1308810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3081 47-1 30881 0 bp Feature: domain Description: GIIM Note: maturase Location: 1308879-1309095 bp Feature: domain Description: GIIM Note: maturase Location: 1 308879-1 309095 bp Feature: gene Location: 1309259-1310038 bp Feature: domain Description: PRK07058 Location: 1309262-1309988 bp Feature: domain Description: PRK07058 Location: 1 309262-1 309988 bp Feature: gene Location: 1310035-1311441 bp Feature: domain Description: PRK08190 Location: 1310053-1311424 bp Feature: domain Description: PRK081 90 Location: 1 31 0053-1 31 1 424 bp Feature: gene Location: 2522532-2522918 bp Feature: gene Location: 2522915-2523652 bp Feature: domain Description: HTH_21 Location: 2523143-2523251 bp Feature: domain Description: HTH_21 Location: 25231 43-2523251 bp Feature: gene Location: 2524225-2525733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2524651-2525341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2524651 -2525341 bp Feature: gene Location: 2526112-2527824 bp Feature: domain Description: RVT_N Location: 2526166-2526409 bp Feature: domain Description: RVT_N Location: 25261 66-2526409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2526454-2527093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2526454-2527093 bp Feature: domain Description: YkfC Location: 2527210-2527396 bp Feature: domain Description: YkfC Location: 252721 0-2527396 bp Feature: domain Description: HNH Note: nucleases Location: 2527636-2527759 bp Feature: domain Description: HNH Note: nucleases Location: 2527636-2527759 bp Feature: gene Location: 2528115-2529881 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2528256-2528469 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2528256-2528469 bp Feature: domain Description: zf-IS66 Location: 2528493-2528625 bp Feature: domain Description: zf-IS66 Location: 2528493-2528625 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2528673-2529540 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2528673-2529540 bp Feature: gene Location: 2529912-2530268 bp Feature: domain Description: TnpB_IS66 Location: 2529939-2530233 bp Feature: domain Description: TnpB_IS66 Location: 2529939-2530233 bp Feature: gene Location: 2547006-2547392 bp Feature: gene Location: 2547389-2548126 bp Feature: domain Description: HTH_21 Location: 2547617-2547725 bp Feature: domain Description: HTH_21 Location: 254761 7-2547725 bp Feature: gene Location: 2548699-2550207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2549125-2549815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25491 25-254981 5 bp Feature: gene Location: 2550498-2550761 bp Feature: domain Description: THN_reductase-like_SDR_c Location: 2550504-2550753 bp Feature: domain Description: THN_reductase-like_SDR_c Location: 2550504-2550753 bp Feature: gene Location: 2551095-2552081 bp Feature: domain Description: KU_like Location: 2551167-2551932 bp Feature: domain Description: KU_like Location: 2551 1 67-2551 932 bp Feature: gene Location: 2887672-2888007 bp Feature: domain Description: PHA02517 Location: 2887702-2887975 bp Feature: domain Description: PHA0251 7 Location: 2887702-2887975 bp Feature: gene Location: 2888015-2889184 bp Feature: domain Description: Tra8 Location: 2888057-2888312 bp Feature: domain Description: Tra8 Location: 2888057-288831 2 bp Feature: domain Description: Tra8 Location: 2888414-2888774 bp Feature: domain Description: Tra8 Location: 288841 4-2888774 bp Feature: domain Description: Tra8 Location: 2888834-2889167 bp Feature: domain Description: Tra8 Location: 2888834-28891 67 bp Feature: gene Location: 2889710-2891242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889983-2890721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889983-2890721 bp Feature: domain Description: GIIM Note: maturase Location: 2890829-2891003 bp Feature: domain Description: GIIM Note: maturase Location: 2890829-2891 003 bp Feature: gene Location: 2891349-2891666 bp Feature: gene Location: 2891722-2893122 bp Feature: domain Description: DDE_5 Location: 2891770-2892499 bp Feature: domain Description: DDE_5 Location: 2891 770-2892499 bp Feature: gene Location: 3379764-3380045 bp Feature: domain Description: Cep57_CLD_2 Location: 3379914-3380013 bp Feature: domain Description: Cep57_CLD_2 Location: 337991 4-338001 3 bp Feature: gene Location: 3380042-3380776 bp Feature: domain Description: HTH_21 Location: 3380270-3380378 bp Feature: domain Description: HTH_21 Location: 3380270-3380378 bp Feature: gene Location: 3381349-3382857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3381775-3382465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3381 775-3382465 bp Feature: gene Location: 3383238-3384179 bp Feature: gene Location: 3384460-3385110 bp Feature: domain Description: Ion_trans_2 Location: 3384904-3385066 bp Feature: domain Description: Ion_trans_2 Location: 3384904-3385066 bp Feature: gene Location: 3390782-3393163 bp Feature: domain Description: Haemagg_act Location: 3390971-3391253 bp Feature: domain Description: Haemagg_act Location: 3390971 -3391 253 bp Feature: gene Location: 3393497-3393715 bp Feature: gene Location: 3394004-3395272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3394253-3394916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3394253-339491 6 bp Feature: domain Description: GIIM Note: maturase Location: 3394985-3395201 bp Feature: domain Description: GIIM Note: maturase Location: 3394985-3395201 bp Feature: gene Location: 3395531-3396292 bp Feature: gene Location: 3396289-3396579 bp Feature: gene Location: 3494505-3494669 bp Feature: gene Location: 3495221-3495529 bp Feature: gene Location: 3495818-3497086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3496067-3496730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3496067-3496730 bp Feature: domain Description: GIIM Note: maturase Location: 3496799-3497015 bp Feature: domain Description: GIIM Note: maturase Location: 3496799-349701 5 bp Feature: gene Location: 3497682-3497855 bp Feature: gene Location: 3498042-3498935 bp Feature: domain Description: PRK15059 Location: 3498051-3498918 bp Feature: domain Description: PRK1 5059 Location: 3498051 -349891 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK06131 (dihydroxy-acid dehydratase; Validated), ARO8 (COG1167), DUF2970 (pfam11174), COG3547 (Transposase ), tauD (PRK09553), Tra8 (COG2826), RVT_N (pfam13655), GIIM (pfam08388), MFS_YcxA_like (cd17355)
TIR_2 (pfam13676), DUF1566 (pfam07603), DUF4157 (pfam13699), AraC (COG2207), HTH_32 (pfam13565), DDE_3 (pfam13358), FDH_like_ADH2 (cd08286), COG4420 (Uncharacterized membrane protein ), HNH (pfam01844), HTH_Tnp_1 (pfam01527)
PHA02517 (putative transposase OrfB; Reviewed), DDE_5 (pfam13546), Haemagg_act (smart00912), PRK07533 (enoyl- reductase FabI), PRK07058 (acetate/propionate family kinase), PRK08190 (bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated), HTH_21 (pfam13276), YkfC (COG3344), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), THN_reductase-like_SDR_c (cd05362), KU_like (cd00789), Cep57_CLD_2 (pfam14197), Ion_trans_2 (pfam07885), PRK15059 (2-hydroxy-3-oxopropionate reductase)

Seq: OCSU01000002.1 (3398011 bp)
Overview 1 RT 1: 1054758-1062616 bp 2 RT 2: 2190557-2197297 bp 3 RT 3: 2517999-2522181 bp 4 RT 4: 2930939-2939945 bp Neighborhood of RT #1 [1054758, 1062630] PRK00529 EarP RVT_N RVT-GII GIIM HNHc uvrC PgsA Neighborhood of RT #2 [2190557, 2197332] Beta_helix Beta_helix RVT_N RVT-GII YkfC HNH LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #3 [2517999, 2522181] PerM RVT-GII GIIM Neighborhood of RT #4 [2930939, 2939971] PRK06958 MFS_YajR_like RVT_N RVT-GII GIIM HNH uvrA PerM Feature: gene Location: 1054758-1055315 bp Feature: domain Description: PRK00529 Location: 1054761-1055313 bp Feature: domain Description: PRK0052 9 Location: 1054761-1055313 bp Feature: gene Location: 1055488-1056690 bp Feature: domain Description: EarP Location: 1055524-1056622 bp Feature: domain Description: EarP Location: 105552 4-105662 2 bp Feature: gene Location: 1057983-1059602 bp Feature: domain Description: RVT_N Location: 1057986-1058184 bp Feature: domain Description: RVT_N Location: 1057986-1058184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1058229-1058877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10582 2 9-1058877 bp Feature: domain Description: GIIM Note: maturase Location: 1058931-1059162 bp Feature: domain Description: GIIM Note: maturase Location: 1058931-1059162 bp Feature: domain Description: HNHc Note: nucleases Location: 1059405-1059546 bp Feature: domain Description: HNHc Note: nucleases Location: 1059405-1059546 bp Feature: gene Location: 1059772-1061928 bp Feature: domain Description: uvrC Location: 1059805-1061926 bp Feature: domain Description: uvrC Location: 1059805-106192 6 bp Feature: gene Location: 1061959-1062630 bp Feature: domain Description: PgsA Location: 1062037-1062616 bp Feature: domain Description: PgsA Location: 1062 037-1062 616 bp Feature: gene Location: 2190557-2191156 bp Feature: gene Location: 2191170-2193170 bp Feature: domain Description: Beta_helix Location: 2191668-2192094 bp Feature: domain Description: Beta_helix Location: 2 191668-2 192 094 bp Feature: domain Description: Beta_helix Location: 2192457-2192811 bp Feature: domain Description: Beta_helix Location: 2 192 457-2 192 811 bp Feature: gene Location: 2193176-2194888 bp Feature: domain Description: RVT_N Location: 2193230-2193473 bp Feature: domain Description: RVT_N Location: 2 1932 30-2 193473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2193518-2194157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 193518-2 194157 bp Feature: domain Description: YkfC Location: 2194274-2194460 bp Feature: domain Description: YkfC Location: 2 1942 74-2 194460 bp Feature: domain Description: HNH Note: nucleases Location: 2194700-2194823 bp Feature: domain Description: HNH Note: nucleases Location: 2 194700-2 19482 3 bp Feature: gene Location: 2195179-2196945 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2195320-2195533 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 19532 0-2 195533 bp Feature: domain Description: zf-IS66 Location: 2195557-2195689 bp Feature: domain Description: zf-IS66 Location: 2 195557-2 195689 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2195737-2196604 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 195737-2 196604 bp Feature: gene Location: 2196976-2197332 bp Feature: domain Description: TnpB_IS66 Location: 2197003-2197297 bp Feature: domain Description: TnpB_IS66 Location: 2 197003-2 1972 97 bp Feature: gene Location: 2517999-2519036 bp Feature: domain Description: PerM Location: 2518029-2519019 bp Feature: domain Description: PerM Location: 2 51802 9-2 519019 bp Feature: gene Location: 2519383-2519646 bp Feature: gene Location: 2520062-2521330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2520311-2520974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 0311-2 52 0974 bp Feature: domain Description: GIIM Note: maturase Location: 2521043-2521259 bp Feature: domain Description: GIIM Note: maturase Location: 2 52 1043-2 52 12 59 bp Feature: gene Location: 2521619-2521858 bp Feature: gene Location: 2521996-2522181 bp Feature: gene Location: 2930939-2931475 bp Feature: domain Description: PRK06958 Location: 2930942-2931473 bp Feature: domain Description: PRK06958 Location: 2 930942 -2 931473 bp Feature: gene Location: 2931601-2932923 bp Feature: domain Description: MFS_YajR_like Location: 2931787-2932885 bp Feature: domain Description: MFS_YajR_like Location: 2 931787-2 932 885 bp Feature: gene Location: 2933122-2934723 bp Feature: domain Description: RVT_N Location: 2933125-2933323 bp Feature: domain Description: RVT_N Location: 2 93312 5-2 93332 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2933368-2934016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 933368-2 934016 bp Feature: domain Description: GIIM Note: maturase Location: 2934070-2934301 bp Feature: domain Description: GIIM Note: maturase Location: 2 934070-2 934301 bp Feature: domain Description: HNH Note: nucleases Location: 2934553-2934688 bp Feature: domain Description: HNH Note: nucleases Location: 2 934553-2 934688 bp Feature: gene Location: 2935864-2938737 bp Feature: domain Description: uvrA Location: 2935870-2938717 bp Feature: domain Description: uvrA Location: 2 935870-2 938717 bp Feature: gene Location: 2938820-2939971 bp Feature: domain Description: PerM Location: 2938991-2939945 bp Feature: domain Description: PerM Location: 2 938991-2 939945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00529 (elongation factor P; Validated), EarP (TIGR03837), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), uvrC (TIGR00194), PgsA (COG0558), Beta_helix (pfam13229), YkfC (COG3344)
HNH (pfam01844), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), PerM (COG0628), PRK06958 (single-stranded DNA-binding protein; Provisional), MFS_YajR_like (cd17472), uvrA (PRK00349)

Seq: OCSU01000003.1 (1670560 bp)
Overview 1 RT 1: 439737-444278 bp 2 RT 2: 1479456-1482646 bp 3 RT 3: 1602626-1609146 bp Neighborhood of RT #1 [439737, 444286] PhyH Aldose_epim_Ec_YphB RVT-GII GIIM LysR Neighborhood of RT #2 [1479456, 1482675] Tra8 RVT_N RVT-GII GIIM Tra8 Tra8 Neighborhood of RT #3 [1602626, 1609175] TctA MviM RVT-GII GIIM STE14 Tra8 Feature: gene Location: 439737-440522 bp Feature: domain Description: PhyH Location: 439785-440346 bp Feature: domain Description: PhyH Location: 43 9785-4403 46 bp Feature: gene Location: 440696-441199 bp Feature: domain Description: Aldose_epim_Ec_YphB Location: 440699-441122 bp Feature: domain Description: Aldose_epim_Ec_YphB Location: 440699-441122 bp Feature: gene Location: 441292-442560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441541-442204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441541-442204 bp Feature: domain Description: GIIM Note: maturase Location: 442273-442489 bp Feature: domain Description: GIIM Note: maturase Location: 442273 -442489 bp Feature: gene Location: 442937-443365 bp Feature: gene Location: 443426-444286 bp Feature: domain Description: LysR Location: 443435-444278 bp Feature: domain Description: LysR Location: 443 43 5-444278 bp Feature: gene Location: 1479456-1480073 bp Feature: domain Description: Tra8 Location: 1479468-1480026 bp Feature: domain Description: Tra8 Location: 1479468-1480026 bp Feature: gene Location: 1480336-1480488 bp Feature: gene Location: 1480629-1482131 bp Feature: domain Description: RVT_N Location: 1480692-1480935 bp Feature: domain Description: RVT_N Location: 1480692-148093 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1480980-1481622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1480980-1481622 bp Feature: domain Description: GIIM Note: maturase Location: 1481673-1481907 bp Feature: domain Description: GIIM Note: maturase Location: 1481673 -1481907 bp Feature: gene Location: 1482289-1482468 bp Feature: domain Description: Tra8 Location: 1482295-1482463 bp Feature: domain Description: Tra8 Location: 1482295-1482463 bp Feature: gene Location: 1482496-1482675 bp Feature: domain Description: Tra8 Location: 1482502-1482646 bp Feature: domain Description: Tra8 Location: 1482502-1482646 bp Feature: gene Location: 1602626-1604011 bp Feature: domain Description: TctA Location: 1602671-1603922 bp Feature: domain Description: TctA Location: 1602671-1603 922 bp Feature: gene Location: 1604200-1605213 bp Feature: domain Description: MviM Location: 1604218-1605193 bp Feature: domain Description: MviM Location: 1604218-1605193 bp Feature: gene Location: 1605674-1606942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605923-1606586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605923 -1606586 bp Feature: domain Description: GIIM Note: maturase Location: 1606655-1606871 bp Feature: domain Description: GIIM Note: maturase Location: 1606655-1606871 bp Feature: gene Location: 1607231-1608070 bp Feature: domain Description: STE14 Location: 1607291-1607825 bp Feature: domain Description: STE14 Location: 1607291-1607825 bp Feature: gene Location: 1608150-1609175 bp Feature: domain Description: Tra8 Location: 1608165-1609146 bp Feature: domain Description: Tra8 Location: 1608165-1609146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhyH (pfam05721), Aldose_epim_Ec_YphB (cd09021), RVT-GII, GIIM (pfam08388), LysR (COG0583), Tra8 (COG2826), RVT_N (pfam13655), TctA (pfam01970), MviM (COG0673), STE14 (COG2020)

Seq: OCSU01000004.1 (479847 bp)
Overview 1 RT 1: 124275-129153 bp 2 RT 2: 181764-186359 bp Neighborhood of RT #1 [124275, 129167] RVT-GII GIIM DUF1488 xerC Neighborhood of RT #2 [181764, 186359] 5beta-POR_like_SDR_a RVT_N RVT-GII YkfC HNH Feature: gene Location: 124275-125180 bp Feature: gene Location: 125177-125416 bp Feature: gene Location: 125705-126973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125954-126617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125954 -126617 bp Feature: domain Description: GIIM Note: maturase Location: 126686-126902 bp Feature: domain Description: GIIM Note: maturase Location: 126686-126902 bp Feature: gene Location: 127604-127876 bp Feature: domain Description: DUF1488 Location: 127628-127835 bp Feature: domain Description: DUF14 88 Location: 127628-127835 bp Feature: gene Location: 127950-129167 bp Feature: domain Description: xerC Location: 128304-129153 bp Feature: domain Description: xerC Location: 128304 -129153 bp Feature: gene Location: 181764-182846 bp Feature: domain Description: 5beta-POR_like_SDR_a Location: 181794-182700 bp Feature: domain Description: 5beta-POR_like_SDR_a Location: 181794 -182700 bp Feature: gene Location: 183075-183479 bp Feature: gene Location: 183485-185197 bp Feature: domain Description: RVT_N Location: 183539-183782 bp Feature: domain Description: RVT_N Location: 183539-183782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183827-184466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183827-184 4 66 bp Feature: domain Description: YkfC Location: 184583-184769 bp Feature: domain Description: YkfC Location: 184 583-184 769 bp Feature: domain Description: HNH Note: nucleases Location: 185009-185132 bp Feature: domain Description: HNH Note: nucleases Location: 185009-185132 bp Feature: gene Location: 185347-185571 bp Feature: gene Location: 186042-186359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF1488 (pfam07369), xerC (PRK01287), 5beta-POR_like_SDR_a (cd08948), RVT_N (pfam13655), YkfC (COG3344), HNH (pfam01844)