myRT

myRT report for GCA_900241035.1_Frankia_canadensis

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Seq: OESX01000112.1 (164194 bp)
Overview 1 RT 1: 29304-32433 bp Neighborhood of RT #1 [29304, 32441] RVT-GII GIIM GrsT MFS_MMR_MDR_like Feature: gene Location: 29304-29456 bp Feature: gene Location: 30063-30293 bp Feature: gene Location: 30297-31439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30378-31008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30378-31 008 bp Feature: domain Description: GIIM Note: maturase Location: 31095-31299 bp Feature: domain Description: GIIM Note: maturase Location: 31 095-31 299 bp Feature: gene Location: 31597-31866 bp Feature: domain Description: GrsT Location: 31600-31861 bp Feature: domain Description: GrsT Location: 31 600-31 861 bp Feature: gene Location: 31956-32441 bp Feature: domain Description: MFS_MMR_MDR_like Location: 31959-32433 bp Feature: domain Description: MFS_MMR_MDR_like Location: 31 959-32433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GrsT (COG3208), MFS_MMR_MDR_like (cd17504)

Seq: OESX01000148.1 (9677 bp)
Overview 1 RT 1: 388-2760 bp Neighborhood of RT #1 [388, 2780] RVT-GII MhpC AcrR Feature: gene Location: 388-813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406-556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406-556 bp Feature: gene Location: 1239-2210 bp Feature: domain Description: MhpC Location: 1455-2184 bp Feature: domain Description: MhpC Location: 1455-2 184 bp Feature: gene Location: 1947-2780 bp Feature: domain Description: AcrR Location: 2175-2760 bp Feature: domain Description: AcrR Location: 2 175-2 760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MhpC (COG0596), AcrR (COG1309)

Seq: OESX01000326.1 (3609 bp)
Overview 1 RT 1: 177-2945 bp Neighborhood of RT #1 [177, 3352] RVT-GII GIIM Rv1155_F420 YbaB_DNA_bd Feature: gene Location: 177-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507-1191 bp Feature: domain Description: GIIM Note: maturase Location: 1263-1485 bp Feature: domain Description: GIIM Note: maturase Location: 1263 -1485 bp Feature: gene Location: 1864-2253 bp Feature: domain Description: Rv1155_F420 Location: 1885-2239 bp Feature: domain Description: Rv1155_F420 Location: 1885-223 9 bp Feature: gene Location: 2735-3352 bp Feature: domain Description: YbaB_DNA_bd Location: 2813-2945 bp Feature: domain Description: YbaB_DNA_bd Location: 2813 -2945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Rv1155_F420 (TIGR03618), YbaB_DNA_bd (pfam02575)

Seq: OESX01000008.1 (22471 bp)
Overview 1 RT 1: 1-3479 bp Neighborhood of RT #1 [1, 4024] RVT-CRISPR Cas6 AAA AAA_35 Feature: gene Location: 1-924 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 109-715 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 109-715 bp Feature: gene Location: 1517-2278 bp Feature: domain Description: Cas6 Location: 1805-2216 bp Feature: domain Description: Cas6 Location: 1805-2216 bp Feature: gene Location: 2213-4024 bp Feature: domain Description: AAA Location: 2552-2879 bp Feature: domain Description: AAA Location: 2552-2879 bp Feature: domain Description: AAA_35 Location: 3020-3479 bp Feature: domain Description: AAA_35 Location: 3020-34 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6 (pfam09559), AAA (TIGR00769), AAA_35 (pfam14516)

Seq: OESX01000394.1 (1937 bp)
Overview 1 RT 1: 155-1768 bp Neighborhood of RT #1 [155, 1869] RVT-GII GIIM Feature: gene Location: 155-505 bp Feature: gene Location: 592-1869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808-1465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808-1465 bp Feature: domain Description: GIIM Note: maturase Location: 1543-1768 bp Feature: domain Description: GIIM Note: maturase Location: 15 43-1768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: OESX01000397.1 (1894 bp)
Overview 1 RT 1: 476-1889 bp Neighborhood of RT #1 [476, 1891] RVT_N RVT-GII GIIM Feature: gene Location: 476-1891 bp Feature: domain Description: RVT_N Location: 737-977 bp Feature: domain Description: RVT_N Location: 737-977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-1697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-16 97 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1889 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: OESX01000417.1 (1612 bp)
Overview 1 RT 1: 45-1383 bp Neighborhood of RT #1 [45, 1610] RVT_N RVT-GII GIIM Feature: gene Location: 45-1610 bp Feature: domain Description: RVT_N Location: 144-384 bp Feature: domain Description: RVT_N Location: 144-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1086 bp Feature: domain Description: GIIM Note: maturase Location: 1152-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1152-1383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: OESX01000486.1 (746 bp)
Overview 1 RT 1: 2-233 bp Neighborhood of RT #1 [2, 745] RVT-UG11 Feature: gene Location: 2-745 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 41-233 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 41-233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: OESX01000001.1 (201039 bp)
Overview 1 RT 1: 129359-134066 bp Neighborhood of RT #1 [129359, 134071] SlyX DDE_Tnp_IS66 RVT-GII DDE_Tnp_1_assoc YhhI YhhI Methyltransf_19 Feature: gene Location: 129359-129664 bp Feature: gene Location: 129987-130868 bp Feature: domain Description: SlyX Location: 130041-130194 bp Feature: domain Description: SlyX Location: 130041-13019 4 bp Feature: domain Description: DDE_Tnp_IS66 Location: 130521-130731 bp Feature: domain Description: DDE_Tnp_IS66 Location: 130521-130731 bp Feature: gene Location: 130972-131775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131287-131674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131287-131674 bp Feature: gene Location: 131979-133178 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 132051-132321 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 132051-132321 bp Feature: domain Description: YhhI Location: 132513-132693 bp Feature: domain Description: YhhI Location: 132513-13269 3 bp Feature: domain Description: YhhI Location: 132960-133098 bp Feature: domain Description: YhhI Location: 1329 60-13309 8 bp Feature: gene Location: 133370-134071 bp Feature: domain Description: Methyltransf_19 Location: 133376-134066 bp Feature: domain Description: Methyltransf_19 Location: 133376-134066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SlyX (pfam04102), DDE_Tnp_IS66 (pfam03050), RVT-GII, DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433), Methyltransf_19 (pfam04672)