myRT

myRT report for GCA_900248245.1_Amuris69

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Seq: OFSM01000083.1 (4724 bp)
Overview 1 RT 1: 2912-4456 bp Neighborhood of RT #1 [2912, 4638] DUF5372 RVT-GII GIIM Feature: gene Location: 2912-3271 bp Feature: gene Location: 3335-3607 bp Feature: domain Description: DUF5372 Location: 3395-3599 bp Feature: domain Description: DUF5372 Location: 3395-3599 bp Feature: gene Location: 3553-4638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3598-4183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3598-41 83 bp Feature: domain Description: GIIM Note: maturase Location: 4243-4456 bp Feature: domain Description: GIIM Note: maturase Location: 4243-4456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388)

Seq: OFSM01000011.1 (180476 bp)
Overview 1 RT 1: 63412-66817 bp Neighborhood of RT #1 [63412, 67302] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 63412-63693 bp Feature: gene Location: 63706-64056 bp Feature: gene Location: 64163-65479 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64490-65153 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64490-65153 bp Feature: gene Location: 65754-66167 bp Feature: domain Description: Avd_like Location: 65820-66129 bp Feature: domain Description: Avd_like Location: 6582 0-6612 9 bp Feature: gene Location: 66229-67302 bp Feature: domain Description: FGE-sulfatase Location: 66481-66817 bp Feature: domain Description: FGE-sulfatase Location: 66481-66817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: OFSM01000079.1 (5383 bp)
Overview 1 RT 1: 2219-4411 bp Neighborhood of RT #1 [2219, 4411] RVT-GII Feature: gene Location: 2219-2461 bp Feature: gene Location: 2482-2724 bp Feature: gene Location: 2977-3612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3232-3571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 2-3 571 bp Feature: gene Location: 3693-3854 bp Feature: gene Location: 3962-4411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: OFSM01000021.1 (113730 bp)
Overview 1 RT 1: 4292-7906 bp 2 RT 2: 42397-44946 bp Neighborhood of RT #1 [4292, 7911] Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 PHA00653 Neighborhood of RT #2 [42397, 44946] RVT-DGRs Feature: gene Location: 4292-4780 bp Feature: domain Description: Phage_holin_4_1 Location: 4331-4661 bp Feature: domain Description: Phage_holin_4 _1 Location: 4 331-4 661 bp Feature: gene Location: 4771-4956 bp Feature: gene Location: 4953-6047 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5193-5811 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5193-5811 bp Feature: gene Location: 6371-6727 bp Feature: domain Description: Avd_like Location: 6401-6704 bp Feature: domain Description: Avd_like Location: 64 01-6704 bp Feature: gene Location: 6769-7911 bp Feature: domain Description: PHA00653 Location: 6904-7387 bp Feature: domain Description: PHA00653 Location: 6904 -7387 bp Feature: domain Description: PHA00653 Location: 7414-7906 bp Feature: domain Description: PHA00653 Location: 74 14 -7906 bp Feature: gene Location: 42397-42636 bp Feature: gene Location: 42670-42921 bp Feature: gene Location: 42923-44080 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43115-43829 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 3115-4 3829 bp Feature: gene Location: 44220-44348 bp Feature: gene Location: 44365-44946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: OFSM01000013.1 (157124 bp)
Overview 1 RT 1: 107755-111940 bp Neighborhood of RT #1 [107755, 112224] DUF16 RVT-DGRs pfam12571 Feature: gene Location: 107755-108063 bp Feature: domain Description: DUF16 Location: 107770-107962 bp Feature: domain Description: DUF16 Location: 107770-107962 bp Feature: gene Location: 108156-108350 bp Feature: gene Location: 108694-109926 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108991-109609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108991-109609 bp Feature: gene Location: 110333-111622 bp Feature: gene Location: 111622-112224 bp Feature: domain Description: pfam12571 Location: 111646-111940 bp Feature: domain Description: pfam125 71 Location: 111646-111940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF16 (pfam01519), RVT-DGRs, pfam12571 (DUF3751;Phage tail-collar fibre protein)

Seq: OFSM01000002.1 (314529 bp)
Overview 1 RT 1: 213408-217796 bp Neighborhood of RT #1 [213408, 218110] RVT-UG26 DUF2142 YdiL Feature: gene Location: 213408-213590 bp Feature: gene Location: 213578-213988 bp Feature: gene Location: 214281-215537 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 214521-215136 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 214521-215136 bp Feature: gene Location: 215534-216913 bp Feature: domain Description: DUF2142 Location: 215789-216728 bp Feature: domain Description: DUF2142 Location: 215789-216 728 bp Feature: gene Location: 217067-218110 bp Feature: domain Description: YdiL Location: 217169-217796 bp Feature: domain Description: YdiL Location: 21716 9-217796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, DUF2142 (pfam09913), YdiL (COG1266)