myRT

myRT report for GCA_900249795.1_CBM2598

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Seq: LT976871.1 (3325199 bp)
Overview 1 RT 1: 324363-330677 bp 2 RT 2: 2684659-2690235 bp Neighborhood of RT #1 [324363, 330691] PGDYG ThiD RVT-GII GIIM HNHc AdoHcyase YvlD Neighborhood of RT #2 [2684659, 2690243] ispH SlpA RVT-GII GIIM HNHc PRK00024 RpmB Feature: gene Location: 324363-324797 bp Feature: domain Description: PGDYG Location: 324483-324783 bp Feature: domain Description: PGDYG Location: 324483-324783 bp Feature: gene Location: 324806-325642 bp Feature: domain Description: ThiD Location: 324821-325622 bp Feature: domain Description: ThiD Location: 324821 -325622 bp Feature: gene Location: 327235-328557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327238-327826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327238-327826 bp Feature: domain Description: GIIM Note: maturase Location: 327880-328111 bp Feature: domain Description: GIIM Note: maturase Location: 327880-3281 1 1 bp Feature: domain Description: HNHc Note: nucleases Location: 328330-328495 bp Feature: domain Description: HNHc Note: nucleases Location: 328330-328495 bp Feature: gene Location: 328838-330256 bp Feature: domain Description: AdoHcyase Location: 328877-330251 bp Feature: domain Description: AdoHcyase Location: 328877-330251 bp Feature: gene Location: 330341-330691 bp Feature: domain Description: YvlD Location: 330344-330677 bp Feature: domain Description: YvlD Location: 330344-330677 bp Feature: gene Location: 2684659-2685624 bp Feature: domain Description: ispH Location: 2684692-2685577 bp Feature: domain Description: ispH Location: 2684692-2685577 bp Feature: gene Location: 2685662-2686150 bp Feature: domain Description: SlpA Location: 2685719-2686145 bp Feature: domain Description: SlpA Location: 268571 9-26861 45 bp Feature: gene Location: 2686261-2687577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2686264-2686867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2686264-2686867 bp Feature: domain Description: GIIM Note: maturase Location: 2686918-2687152 bp Feature: domain Description: GIIM Note: maturase Location: 268691 8-26871 52 bp Feature: domain Description: HNHc Note: nucleases Location: 2687374-2687536 bp Feature: domain Description: HNHc Note: nucleases Location: 2687374-2687536 bp Feature: gene Location: 2689127-2689819 bp Feature: domain Description: PRK00024 Location: 2689136-2689796 bp Feature: domain Description: PRK00024 Location: 26891 36-2689796 bp Feature: gene Location: 2690046-2690243 bp Feature: domain Description: RpmB Location: 2690049-2690235 bp Feature: domain Description: RpmB Location: 2690049-2690235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGDYG (pfam14083), ThiD (COG0351), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoHcyase (smart00996), YvlD (COG1950), ispH (PRK01045), SlpA (COG1047), PRK00024 (DNA repair protein RadC)
RpmB (COG0227)

Seq: OFSW01000036.1 (134820 bp)
Overview 1 RT 1: 29875-33207 bp Neighborhood of RT #1 [29875, 33207] RVT_N RVT-GII RVT-GII GIIM COG3547 Feature: gene Location: 29875-30183 bp Feature: gene Location: 30246-30395 bp Feature: gene Location: 30950-31711 bp Feature: domain Description: RVT_N Location: 31013-31247 bp Feature: domain Description: RVT_N Location: 31013-312 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31301-31667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31301-31667 bp Feature: gene Location: 31620-32450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31653-31944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31653-31944 bp Feature: domain Description: GIIM Note: maturase Location: 31995-32229 bp Feature: domain Description: GIIM Note: maturase Location: 31995-32 2 2 9 bp Feature: gene Location: 32441-33040 bp Feature: domain Description: COG3547 Location: 32543-32954 bp Feature: domain Description: COG3547 Location: 32 543-32 954 bp Feature: gene Location: 33076-33207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: LT992561.1 (327049 bp)
Overview 1 RT 1: 18127-24273 bp Neighborhood of RT #1 [18127, 24273] XerD DNA_BRE_C PRK06850 RVT-GII GIIM SbcC ABC_Class2 Feature: gene Location: 18127-19596 bp Feature: domain Description: XerD Location: 18421-18664 bp Feature: domain Description: XerD Location: 18421-18664 bp Feature: domain Description: DNA_BRE_C Location: 18895-19489 bp Feature: domain Description: DNA_BRE_C Location: 18895-19489 bp Feature: gene Location: 19729-20373 bp Feature: domain Description: PRK06850 Location: 19783-20320 bp Feature: domain Description: PRK06850 Location: 19783 -203 20 bp Feature: gene Location: 20643-21278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20709-20919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20709-20919 bp Feature: domain Description: GIIM Note: maturase Location: 20970-21186 bp Feature: domain Description: GIIM Note: maturase Location: 20970-21186 bp Feature: gene Location: 21305-23626 bp Feature: domain Description: SbcC Location: 21308-23120 bp Feature: domain Description: SbcC Location: 213 08-23 120 bp Feature: domain Description: ABC_Class2 Location: 23309-23603 bp Feature: domain Description: ABC_Class2 Location: 23 3 09-23 603 bp Feature: gene Location: 23614-24273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), DNA_BRE_C (cl00213), PRK06850 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), SbcC (COG0419), ABC_Class2 (cd03227)