myRT

myRT report for GCA_900249815.1_CBM2594

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Seq: OGUU01000049.1 (134789 bp)
Overview 1 RT 1: 101614-105750 bp Neighborhood of RT #1 [101614, 105767] COG3547 RVT-GII GIIM RVT_N RVT-GII COG3544 Feature: gene Location: 101614-101745 bp Feature: gene Location: 101781-102380 bp Feature: domain Description: COG3547 Location: 101883-102294 bp Feature: domain Description: COG3547 Location: 1 01 883-1 02294 bp Feature: gene Location: 102371-103201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102404-102695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02404-1 02695 bp Feature: domain Description: GIIM Note: maturase Location: 102746-102980 bp Feature: domain Description: GIIM Note: maturase Location: 1 02746-1 02980 bp Feature: gene Location: 103110-103871 bp Feature: domain Description: RVT_N Location: 103173-103407 bp Feature: domain Description: RVT_N Location: 1 031 73-1 03407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103461-103827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 03461 -1 03827 bp Feature: gene Location: 104638-104946 bp Feature: gene Location: 105372-105767 bp Feature: domain Description: COG3544 Location: 105489-105750 bp Feature: domain Description: COG3544 Location: 1 05489-1 05750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), COG3544 (Uncharacterized conserved protein, DUF305 family )

Seq: LT992564.1 (3325457 bp)
Overview 1 RT 1: 324710-331024 bp 2 RT 2: 2685500-2691076 bp Neighborhood of RT #1 [324710, 331038] PGDYG ThiD RVT-GII GIIM HNHc AdoHcyase YvlD Neighborhood of RT #2 [2685500, 2691084] ispH SlpA RVT-GII GIIM HNHc PRK00024 RpmB Feature: gene Location: 324710-325144 bp Feature: domain Description: PGDYG Location: 324830-325130 bp Feature: domain Description: PGDYG Location: 32 4830-32 5130 bp Feature: gene Location: 325153-325989 bp Feature: domain Description: ThiD Location: 325168-325969 bp Feature: domain Description: ThiD Location: 32 5168-32 5969 bp Feature: gene Location: 327582-328904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327585-328173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 7585-32 8173 bp Feature: domain Description: GIIM Note: maturase Location: 328227-328458 bp Feature: domain Description: GIIM Note: maturase Location: 32 82 2 7-32 8458 bp Feature: domain Description: HNHc Note: nucleases Location: 328677-328842 bp Feature: domain Description: HNHc Note: nucleases Location: 32 8677-32 8842 bp Feature: gene Location: 329185-330603 bp Feature: domain Description: AdoHcyase Location: 329224-330598 bp Feature: domain Description: AdoHcyase Location: 32 92 2 4-330598 bp Feature: gene Location: 330688-331038 bp Feature: domain Description: YvlD Location: 330691-331024 bp Feature: domain Description: YvlD Location: 330691-33102 4 bp Feature: gene Location: 2685500-2686465 bp Feature: domain Description: ispH Location: 2685533-2686418 bp Feature: domain Description: ispH Location: 2 685533-2 686418 bp Feature: gene Location: 2686503-2686991 bp Feature: domain Description: SlpA Location: 2686560-2686986 bp Feature: domain Description: SlpA Location: 2 686560-2 686986 bp Feature: gene Location: 2687102-2688418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2687105-2687708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 687105-2 687708 bp Feature: domain Description: GIIM Note: maturase Location: 2687759-2687993 bp Feature: domain Description: GIIM Note: maturase Location: 2 687759-2 687993 bp Feature: domain Description: HNHc Note: nucleases Location: 2688215-2688377 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6882 15-2 688377 bp Feature: gene Location: 2689968-2690660 bp Feature: domain Description: PRK00024 Location: 2689977-2690637 bp Feature: domain Description: PRK0002 4 Location: 2 689977-2 690637 bp Feature: gene Location: 2690887-2691084 bp Feature: domain Description: RpmB Location: 2690890-2691076 bp Feature: domain Description: RpmB Location: 2 690890-2 691076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGDYG (pfam14083), ThiD (COG0351), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoHcyase (smart00996), YvlD (COG1950), ispH (PRK01045), SlpA (COG1047), PRK00024 (DNA repair protein RadC)
RpmB (COG0227)

Seq: LT992565.1 (320467 bp)
Overview 1 RT 1: 18001-24147 bp Neighborhood of RT #1 [18001, 24147] XerD DNA_BRE_C PRK06850 RVT-GII GIIM SbcC ABC_Class2 Feature: gene Location: 18001-19470 bp Feature: domain Description: XerD Location: 18295-18538 bp Feature: domain Description: XerD Location: 18295-1853 8 bp Feature: domain Description: DNA_BRE_C Location: 18769-19363 bp Feature: domain Description: DNA_BRE_C Location: 18769-193 63 bp Feature: gene Location: 19603-20247 bp Feature: domain Description: PRK06850 Location: 19657-20194 bp Feature: domain Description: PRK06850 Location: 19657-20194 bp Feature: gene Location: 20517-21152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20583-20793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20583 -20793 bp Feature: domain Description: GIIM Note: maturase Location: 20844-21060 bp Feature: domain Description: GIIM Note: maturase Location: 20844-21060 bp Feature: gene Location: 21179-23500 bp Feature: domain Description: SbcC Location: 21182-22994 bp Feature: domain Description: SbcC Location: 21182-22994 bp Feature: domain Description: ABC_Class2 Location: 23183-23477 bp Feature: domain Description: ABC_Class2 Location: 23 183 -23 477 bp Feature: gene Location: 23488-24147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), DNA_BRE_C (cl00213), PRK06850 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), SbcC (COG0419), ABC_Class2 (cd03227)