myRT

myRT report for GCA_900249835.1_CBM2597

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Seq: LT992571.1 (324585 bp)
Overview 1 RT 1: 17993-24139 bp Neighborhood of RT #1 [17993, 24139] XerD DNA_BRE_C PRK06850 RVT-GII GIIM SbcC ABC_Class2 Feature: gene Location: 17993-19462 bp Feature: domain Description: XerD Location: 18287-18530 bp Feature: domain Description: XerD Location: 1 8287-1 8530 bp Feature: domain Description: DNA_BRE_C Location: 18761-19355 bp Feature: domain Description: DNA_BRE_C Location: 1 8761 -1 9355 bp Feature: gene Location: 19595-20239 bp Feature: domain Description: PRK06850 Location: 19649-20186 bp Feature: domain Description: PRK06850 Location: 1 9649-201 86 bp Feature: gene Location: 20509-21144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20575-20785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20575-20785 bp Feature: domain Description: GIIM Note: maturase Location: 20836-21052 bp Feature: domain Description: GIIM Note: maturase Location: 20836-21 052 bp Feature: gene Location: 21171-23492 bp Feature: domain Description: SbcC Location: 21174-22986 bp Feature: domain Description: SbcC Location: 21 1 74-22986 bp Feature: domain Description: ABC_Class2 Location: 23175-23469 bp Feature: domain Description: ABC_Class2 Location: 231 75-23469 bp Feature: gene Location: 23480-24139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), DNA_BRE_C (cl00213), PRK06850 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), SbcC (COG0419), ABC_Class2 (cd03227)

Seq: OFSY01000056.1 (134785 bp)
Overview 1 RT 1: 29842-33174 bp Neighborhood of RT #1 [29842, 33174] RVT_N RVT-GII RVT-GII GIIM COG3547 Feature: gene Location: 29842-30150 bp Feature: gene Location: 30213-30362 bp Feature: gene Location: 30917-31678 bp Feature: domain Description: RVT_N Location: 30980-31214 bp Feature: domain Description: RVT_N Location: 30980-312 14 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31268-31634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 68-31634 bp Feature: gene Location: 31587-32417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31620-31911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162 0-31911 bp Feature: domain Description: GIIM Note: maturase Location: 31962-32196 bp Feature: domain Description: GIIM Note: maturase Location: 31962 -32 196 bp Feature: gene Location: 32408-33007 bp Feature: domain Description: COG3547 Location: 32510-32921 bp Feature: domain Description: COG3547 Location: 32 510-32 92 1 bp Feature: gene Location: 33043-33174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: LT992570.1 (3325535 bp)
Overview 1 RT 1: 324346-330660 bp 2 RT 2: 2683145-2688721 bp Neighborhood of RT #1 [324346, 330674] PGDYG ThiD RVT-GII GIIM HNHc AdoHcyase YvlD Neighborhood of RT #2 [2683145, 2688729] ispH SlpA RVT-GII GIIM HNHc PRK00024 RpmB Feature: gene Location: 324346-324780 bp Feature: domain Description: PGDYG Location: 324466-324766 bp Feature: domain Description: PGDYG Location: 3 24466-3 24766 bp Feature: gene Location: 324789-325625 bp Feature: domain Description: ThiD Location: 324804-325605 bp Feature: domain Description: ThiD Location: 3 24804-3 25605 bp Feature: gene Location: 327218-328540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327221-327809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 27221-3 27809 bp Feature: domain Description: GIIM Note: maturase Location: 327863-328094 bp Feature: domain Description: GIIM Note: maturase Location: 3 27863 -3 28094 bp Feature: domain Description: HNHc Note: nucleases Location: 328313-328478 bp Feature: domain Description: HNHc Note: nucleases Location: 3 283 13 -3 28478 bp Feature: gene Location: 328821-330239 bp Feature: domain Description: AdoHcyase Location: 328860-330234 bp Feature: domain Description: AdoHcyase Location: 3 28860-3 3 023 4 bp Feature: gene Location: 330324-330674 bp Feature: domain Description: YvlD Location: 330327-330660 bp Feature: domain Description: YvlD Location: 3 3 03 27-3 3 0660 bp Feature: gene Location: 2683145-2684110 bp Feature: domain Description: ispH Location: 2683178-2684063 bp Feature: domain Description: ispH Location: 2683 178-2684063 bp Feature: gene Location: 2684148-2684636 bp Feature: domain Description: SlpA Location: 2684205-2684631 bp Feature: domain Description: SlpA Location: 2684205-268463 1 bp Feature: gene Location: 2684747-2686063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684750-2685353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684750-26853 53 bp Feature: domain Description: GIIM Note: maturase Location: 2685404-2685638 bp Feature: domain Description: GIIM Note: maturase Location: 2685404-268563 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2685860-2686022 bp Feature: domain Description: HNHc Note: nucleases Location: 2685860-2686022 bp Feature: gene Location: 2687613-2688305 bp Feature: domain Description: PRK00024 Location: 2687622-2688282 bp Feature: domain Description: PRK00024 Location: 2687622-2688282 bp Feature: gene Location: 2688532-2688729 bp Feature: domain Description: RpmB Location: 2688535-2688721 bp Feature: domain Description: RpmB Location: 268853 5-2688721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGDYG (pfam14083), ThiD (COG0351), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoHcyase (smart00996), YvlD (COG1950), ispH (PRK01045), SlpA (COG1047), PRK00024 (DNA repair protein RadC)
RpmB (COG0227)