myRT

myRT report for GCA_900250105.1_CBM2596

Download annotations/find similar RTs

Seq: LT984801.1 (3387519 bp)
Overview 1 RT 1: 208625-214939 bp 2 RT 2: 2620281-2625857 bp Neighborhood of RT #1 [208625, 214953] PGDYG ThiD RVT-GII GIIM HNHc AdoHcyase YvlD Neighborhood of RT #2 [2620281, 2625865] ispH SlpA RVT-GII GIIM HNHc PRK00024 RpmB Feature: gene Location: 208625-209059 bp Feature: domain Description: PGDYG Location: 208745-209045 bp Feature: domain Description: PGDYG Location: 208745-209045 bp Feature: gene Location: 209068-209904 bp Feature: domain Description: ThiD Location: 209083-209884 bp Feature: domain Description: ThiD Location: 209083-209884 bp Feature: gene Location: 211497-212819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211500-212088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 500-21 2088 bp Feature: domain Description: GIIM Note: maturase Location: 212142-212373 bp Feature: domain Description: GIIM Note: maturase Location: 21 21 42-21 2373 bp Feature: domain Description: HNHc Note: nucleases Location: 212592-212757 bp Feature: domain Description: HNHc Note: nucleases Location: 21 2592-21 2757 bp Feature: gene Location: 213100-214518 bp Feature: domain Description: AdoHcyase Location: 213139-214513 bp Feature: domain Description: AdoHcyase Location: 21 31 39-21 451 3 bp Feature: gene Location: 214603-214953 bp Feature: domain Description: YvlD Location: 214606-214939 bp Feature: domain Description: YvlD Location: 21 4606-21 4939 bp Feature: gene Location: 2620281-2621246 bp Feature: domain Description: ispH Location: 2620314-2621199 bp Feature: domain Description: ispH Location: 262031 4-2621 1 99 bp Feature: gene Location: 2621284-2621772 bp Feature: domain Description: SlpA Location: 2621341-2621767 bp Feature: domain Description: SlpA Location: 2621 341 -2621 767 bp Feature: gene Location: 2621883-2623199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2621886-2622489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2621 886-2622489 bp Feature: domain Description: GIIM Note: maturase Location: 2622540-2622774 bp Feature: domain Description: GIIM Note: maturase Location: 2622540-2622774 bp Feature: domain Description: HNHc Note: nucleases Location: 2622996-2623158 bp Feature: domain Description: HNHc Note: nucleases Location: 2622996-26231 58 bp Feature: gene Location: 2624749-2625441 bp Feature: domain Description: PRK00024 Location: 2624758-2625418 bp Feature: domain Description: PRK00024 Location: 2624758-262541 8 bp Feature: gene Location: 2625668-2625865 bp Feature: domain Description: RpmB Location: 2625671-2625857 bp Feature: domain Description: RpmB Location: 2625671 -2625857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGDYG (pfam14083), ThiD (COG0351), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoHcyase (smart00996), YvlD (COG1950), ispH (PRK01045), SlpA (COG1047), PRK00024 (DNA repair protein RadC)
RpmB (COG0227)

Seq: LT984799.1 (586796 bp)
Overview 1 RT 1: 9710-15856 bp 2 RT 2: 554192-560338 bp Neighborhood of RT #1 [9710, 15856] XerD DNA_BRE_C PRK06850 RVT-GII GIIM SbcC ABC_Class2 Neighborhood of RT #2 [554192, 560338] XerD DNA_BRE_C PRK06850 RVT-GII GIIM SbcC ABC_Class2 Feature: gene Location: 9710-11179 bp Feature: domain Description: XerD Location: 10004-10247 bp Feature: domain Description: XerD Location: 10004-102 47 bp Feature: domain Description: DNA_BRE_C Location: 10478-11072 bp Feature: domain Description: DNA_BRE_C Location: 10478-11072 bp Feature: gene Location: 11312-11956 bp Feature: domain Description: PRK06850 Location: 11366-11903 bp Feature: domain Description: PRK06850 Location: 11366-11903 bp Feature: gene Location: 12226-12861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12292-12502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 92 -12 502 bp Feature: domain Description: GIIM Note: maturase Location: 12553-12769 bp Feature: domain Description: GIIM Note: maturase Location: 12 553-12 769 bp Feature: gene Location: 12888-15209 bp Feature: domain Description: SbcC Location: 12891-14703 bp Feature: domain Description: SbcC Location: 12 891-14703 bp Feature: domain Description: ABC_Class2 Location: 14892-15186 bp Feature: domain Description: ABC_Class2 Location: 14892 -15186 bp Feature: gene Location: 15197-15856 bp Feature: gene Location: 554192-555661 bp Feature: domain Description: XerD Location: 554486-554729 bp Feature: domain Description: XerD Location: 554486-55472 9 bp Feature: domain Description: DNA_BRE_C Location: 554960-555554 bp Feature: domain Description: DNA_BRE_C Location: 554960-555554 bp Feature: gene Location: 555794-556438 bp Feature: domain Description: PRK06850 Location: 555848-556385 bp Feature: domain Description: PRK06850 Location: 555848-556385 bp Feature: gene Location: 556708-557343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556774-556984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556774-556984 bp Feature: domain Description: GIIM Note: maturase Location: 557035-557251 bp Feature: domain Description: GIIM Note: maturase Location: 557035-5572 51 bp Feature: gene Location: 557370-559691 bp Feature: domain Description: SbcC Location: 557373-559185 bp Feature: domain Description: SbcC Location: 557373-559185 bp Feature: domain Description: ABC_Class2 Location: 559374-559668 bp Feature: domain Description: ABC_Class2 Location: 559374-559668 bp Feature: gene Location: 559679-560338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), DNA_BRE_C (cl00213), PRK06850 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), SbcC (COG0419), ABC_Class2 (cd03227)

Seq: LT984800.1 (276139 bp)
Overview 1 RT 1: 168958-173111 bp Neighborhood of RT #1 [168958, 173111] COG3544 RVT_N RVT-GII RVT-GII GIIM COG3547 Feature: gene Location: 168958-169353 bp Feature: domain Description: COG3544 Location: 169075-169336 bp Feature: domain Description: COG3 544 Location: 169075-1693 3 6 bp Feature: gene Location: 169779-170087 bp Feature: gene Location: 170854-171615 bp Feature: domain Description: RVT_N Location: 170917-171151 bp Feature: domain Description: RVT_N Location: 170917-171151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171205-171571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171205-171571 bp Feature: gene Location: 171524-172354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171557-171848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171557-171848 bp Feature: domain Description: GIIM Note: maturase Location: 171899-172133 bp Feature: domain Description: GIIM Note: maturase Location: 171899-17213 3 bp Feature: gene Location: 172345-172944 bp Feature: domain Description: COG3547 Location: 172447-172858 bp Feature: domain Description: COG3 547 Location: 172447-172858 bp Feature: gene Location: 172980-173111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3544 (Uncharacterized conserved protein, DUF305 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )