myRT

myRT report for GCA_900258535.1_PRJEB24722

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Seq: OIWX01000001.1 (6163213 bp)
Overview 1 RT 1: 942916-946632 bp 2 RT 2: 1115169-1118192 bp 3 RT 3: 1150966-1163354 bp 4 RT 4: 1175802-1180601 bp 5 RT 5: 1217917-1222588 bp 6 RT 6: 1410681-1417614 bp 7 RT 7: 1555944-1562720 bp 8 RT 8: 1584792-1588281 bp Neighborhood of RT #1 [942916, 946676] RVT-GII VirD4 Neighborhood of RT #2 [1115169, 1118347] DUF2442 DUF4160 RVT-GII GIIM DDE_Tnp_1_6 Neighborhood of RT #3 [1150966, 1163368] DUF3848 DUF3849 COG4646 KOG1000 RVT-GII HNHc YtxK COG4646 TTRAP Neighborhood of RT #4 [1175802, 1180645] Maff2 TraG-D_C RVT-GII T4SS-DNA_transf T4SS-DNA_transf Neighborhood of RT #5 [1217917, 1222755] LysR RVT-GII GIIM DUF4091 Neighborhood of RT #6 [1410681, 1417619] PurR RVT-Retrons RVT-GII PRK09273 Neighborhood of RT #7 [1555944, 1562725] COG3533 YicI RVT-GII GIIM UgpE Neighborhood of RT #8 [1584792, 1588281] Mrr_cat RVT-UG15 HTH_XRE Feature: gene Location: 942916-943089 bp Feature: gene Location: 943095-943250 bp Feature: gene Location: 943355-945262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943685-944429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943685-944429 bp Feature: gene Location: 945329-945487 bp Feature: gene Location: 945918-946676 bp Feature: domain Description: VirD4 Location: 946125-946632 bp Feature: domain Description: VirD4 Location: 9461 25-946632 bp Feature: gene Location: 1115169-1115444 bp Feature: domain Description: DUF2442 Location: 1115184-1115415 bp Feature: domain Description: DUF2442 Location: 1 1 1 51 84-1 1 1 541 5 bp Feature: gene Location: 1115461-1115721 bp Feature: domain Description: DUF4160 Location: 1115488-1115674 bp Feature: domain Description: DUF41 60 Location: 1 1 1 5488-1 1 1 5674 bp Feature: gene Location: 1115832-1117151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116036-1116651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 6036-1 1 1 6651 bp Feature: domain Description: GIIM Note: maturase Location: 1116711-1116942 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 671 1 -1 1 1 6942 bp Feature: gene Location: 1117442-1117606 bp Feature: gene Location: 1117688-1118347 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1117838-1118192 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 1 1 7838-1 1 1 81 92 bp Feature: gene Location: 1150966-1152285 bp Feature: domain Description: DUF3848 Location: 1151233-1151512 bp Feature: domain Description: DUF3848 Location: 1 1 51 233-1 1 51 51 2 bp Feature: domain Description: DUF3849 Location: 1151560-1151941 bp Feature: domain Description: DUF3849 Location: 1 1 51 560-1 1 51 941 bp Feature: gene Location: 1152285-1154345 bp Feature: domain Description: COG4646 Location: 1152291-1152900 bp Feature: domain Description: COG4646 Location: 1 1 52291 -1 1 52900 bp Feature: domain Description: KOG1000 Location: 1153344-1153548 bp Feature: domain Description: KOG1 000 Location: 1 1 53344-1 1 53548 bp Feature: gene Location: 1154534-1156333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154828-1155527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 54828-1 1 55527 bp Feature: domain Description: HNHc Note: nucleases Location: 1156142-1156256 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 561 42-1 1 56256 bp Feature: gene Location: 1157022-1163081 bp Feature: domain Description: YtxK Location: 1160304-1161042 bp Feature: domain Description: YtxK Location: 1 1 60304-1 1 61 042 bp Feature: domain Description: COG4646 Location: 1161114-1163055 bp Feature: domain Description: COG4646 Location: 1 1 61 1 1 4-1 1 63055 bp Feature: gene Location: 1163153-1163368 bp Feature: domain Description: TTRAP Location: 1163165-1163354 bp Feature: domain Description: TTRAP Location: 1 1 631 65-1 1 63354 bp Feature: gene Location: 1175802-1176032 bp Feature: domain Description: Maff2 Location: 1175820-1176027 bp Feature: domain Description: Maff2 Location: 1 1 75820-1 1 76027 bp Feature: gene Location: 1176066-1177091 bp Feature: domain Description: TraG-D_C Location: 1176525-1176879 bp Feature: domain Description: TraG-D_C Location: 1 1 76525-1 1 76879 bp Feature: gene Location: 1177243-1179150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1177573-1178317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 77573-1 1 7831 7 bp Feature: gene Location: 1179217-1179375 bp Feature: gene Location: 1179806-1180645 bp Feature: domain Description: T4SS-DNA_transf Location: 1180229-1180358 bp Feature: domain Description: T4SS-DNA_transf Location: 1 1 80229-1 1 80358 bp Feature: domain Description: T4SS-DNA_transf Location: 1180445-1180601 bp Feature: domain Description: T4SS-DNA_transf Location: 1 1 80445-1 1 80601 bp Feature: gene Location: 1217917-1218885 bp Feature: domain Description: LysR Location: 1217965-1218877 bp Feature: domain Description: LysR Location: 1 21 7965-1 21 8877 bp Feature: gene Location: 1218896-1219027 bp Feature: gene Location: 1219161-1220444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1219365-1219980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 9365-1 21 9980 bp Feature: domain Description: GIIM Note: maturase Location: 1220040-1220271 bp Feature: domain Description: GIIM Note: maturase Location: 1 220040-1 220271 bp Feature: gene Location: 1220735-1220899 bp Feature: gene Location: 1221070-1222755 bp Feature: domain Description: DUF4091 Location: 1222372-1222588 bp Feature: domain Description: DUF4091 Location: 1 222372-1 222588 bp Feature: gene Location: 1410681-1411721 bp Feature: domain Description: PurR Location: 1410705-1411704 bp Feature: domain Description: PurR Location: 1 41 0705-1 41 1 704 bp Feature: gene Location: 1411731-1411868 bp Feature: gene Location: 1412299-1413315 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1412464-1413019 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 41 2464-1 41 301 9 bp Feature: gene Location: 1413381-1413926 bp Feature: gene Location: 1414070-1415977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414400-1415144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 4400-1 41 51 44 bp Feature: gene Location: 1416659-1416910 bp Feature: gene Location: 1416981-1417619 bp Feature: domain Description: PRK09273 Location: 1416984-1417614 bp Feature: domain Description: PRK09273 Location: 1 41 6984-1 41 761 4 bp Feature: gene Location: 1555944-1557914 bp Feature: domain Description: COG3533 Location: 1555962-1557882 bp Feature: domain Description: COG3533 Location: 1 555962-1 557882 bp Feature: gene Location: 1557935-1559947 bp Feature: domain Description: YicI Location: 1558091-1559921 bp Feature: domain Description: YicI Location: 1 558091 -1 559921 bp Feature: gene Location: 1560084-1561382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1560339-1561029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 560339-1 561 029 bp Feature: domain Description: GIIM Note: maturase Location: 1561110-1561314 bp Feature: domain Description: GIIM Note: maturase Location: 1 561 1 1 0-1 561 31 4 bp Feature: gene Location: 1561577-1561744 bp Feature: gene Location: 1561883-1562725 bp Feature: domain Description: UgpE Location: 1561898-1562720 bp Feature: domain Description: UgpE Location: 1 561 898-1 562720 bp Feature: gene Location: 1584792-1585406 bp Feature: domain Description: Mrr_cat Location: 1584846-1585188 bp Feature: domain Description: Mrr_cat Location: 1 584846-1 5851 88 bp Feature: gene Location: 1585431-1586000 bp Feature: gene Location: 1586105-1587601 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1586531-1586924 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 586531 -1 586924 bp Feature: gene Location: 1587651-1587896 bp Feature: domain Description: HTH_XRE Location: 1587699-1587879 bp Feature: domain Description: HTH_XRE Location: 1 587699-1 587879 bp Feature: gene Location: 1587994-1588281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VirD4 (COG3505), DUF2442 (pfam10387), DUF4160 (pfam13711), GIIM (pfam08388), DDE_Tnp_1_6 (pfam13751), DUF3848 (pfam12959), DUF3849 (pfam12960), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )
HNHc (smart00507), YtxK (COG0827), TTRAP (pfam14203), Maff2 (pfam12750), TraG-D_C (pfam12696), T4SS-DNA_transf (pfam02534), LysR (COG0583), DUF4091 (pfam13320), PurR (COG1609), RVT-Retrons
PRK09273 (hypothetical protein; Provisional), COG3533 (Uncharacterized conserved protein, DUF1680 family ), YicI (COG1501), UgpE (COG0395), Mrr_cat (pfam04471), RVT-UG15, HTH_XRE (smart00530)