myRT

myRT report for GCA_900314525.1_Rumen_uncultured_genome_RUG009

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Seq: OMVN01000028.1 (29463 bp)
Overview 1 RT 1: 9620-14142 bp Neighborhood of RT #1 [9620, 14142] RVT-UG24 HDc Feature: gene Location: 9620-10126 bp Feature: gene Location: 10113-10580 bp Feature: gene Location: 10767-13376 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 10770-11070 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 1 0770-1 1 070 bp Feature: domain Description: HDc Location: 12342-12864 bp Feature: domain Description: HDc Location: 1 2342-1 2864 bp Feature: gene Location: 13527-13778 bp Feature: gene Location: 13771-14142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG24, HDc (smart00471)

Seq: OMVN01000050.1 (13617 bp)
Overview 1 RT 1: 3159-8051 bp Neighborhood of RT #1 [3159, 8051] HTH_XRE HipB LexA RVT_N RVT-GII YkfC PRK03103 Feature: gene Location: 3159-3362 bp Feature: domain Description: HTH_XRE Location: 3174-3336 bp Feature: domain Description: HTH_XRE Location: 3174-3336 bp Feature: gene Location: 3435-4172 bp Feature: domain Description: HipB Location: 3447-3735 bp Feature: domain Description: HipB Location: 3447-3735 bp Feature: domain Description: LexA Location: 3807-4137 bp Feature: domain Description: LexA Location: 3807-4137 bp Feature: gene Location: 4786-6357 bp Feature: domain Description: RVT_N Location: 4933-5176 bp Feature: domain Description: RVT_N Location: 4933-5176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5221-5869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 1-5869 bp Feature: domain Description: YkfC Location: 5959-6169 bp Feature: domain Description: YkfC Location: 5959-6169 bp Feature: gene Location: 6493-7677 bp Feature: domain Description: PRK03103 Location: 6499-7618 bp Feature: domain Description: PRK03103 Location: 6499-7618 bp Feature: gene Location: 7800-8051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), HipB (COG1396), LexA (COG1974), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), PRK03103 (DNA polymerase IV; Reviewed)

Seq: OMVN01000016.1 (51322 bp)
Overview 1 RT 1: 4607-12776 bp 2 RT 2: 37960-46078 bp Neighborhood of RT #1 [4607, 12776] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like COG0610 RVT-UG5 R-amidase_like Neighborhood of RT #2 [37960, 46083] COG0610 COG1479 COG3586 RVT-UG2 COG2865 Feature: gene Location: 4607-5740 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4853-5159 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4853 -5159 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 5438-5642 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 543 8-5642 bp Feature: gene Location: 5744-9178 bp Feature: domain Description: COG0610 Location: 5783-8765 bp Feature: domain Description: COG0610 Location: 5783 -8765 bp Feature: gene Location: 9229-12246 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 9736-10240 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 973 6-10240 bp Feature: domain Description: R-amidase_like Location: 11533-12106 bp Feature: domain Description: R-amidase_like Location: 1153 3 -12106 bp Feature: gene Location: 12373-12525 bp Feature: gene Location: 12555-12776 bp Feature: gene Location: 37960-41154 bp Feature: domain Description: COG0610 Location: 37981-40957 bp Feature: domain Description: COG0610 Location: 3 7981-40957 bp Feature: gene Location: 41167-43233 bp Feature: domain Description: COG1479 Location: 41191-42451 bp Feature: domain Description: COG1479 Location: 41191-42451 bp Feature: domain Description: COG3586 Location: 42928-43222 bp Feature: domain Description: COG3 586 Location: 42928-43 222 bp Feature: gene Location: 43554-44849 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 43740-44550 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 43 740-44550 bp Feature: gene Location: 44882-45130 bp Feature: gene Location: 45328-46083 bp Feature: domain Description: COG2865 Location: 45331-46078 bp Feature: domain Description: COG2865 Location: 453 3 1-46078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, R-amidase_like (cd07576), COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), COG3586 (Predicted transport protein ), RVT-UG2, COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: OMVN01000008.1 (69719 bp)
Overview 1 RT 1: 21963-28223 bp Neighborhood of RT #1 [21963, 28237] HemolysinCabind RVT-UG26 AmyAc_arch_bac_AmyA AmyA FolC Feature: gene Location: 21963-23225 bp Feature: domain Description: HemolysinCabind Location: 23073-23175 bp Feature: domain Description: HemolysinCabind Location: 23073-23175 bp Feature: gene Location: 23536-23961 bp Feature: gene Location: 24228-25433 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 24429-25038 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 24 4 29-25038 bp Feature: gene Location: 25528-26937 bp Feature: domain Description: AmyAc_arch_bac_AmyA Location: 25672-26668 bp Feature: domain Description: AmyAc_arch_bac_AmyA Location: 25672-26668 bp Feature: domain Description: AmyA Location: 26680-26812 bp Feature: domain Description: AmyA Location: 26680-26812 bp Feature: gene Location: 26954-28237 bp Feature: domain Description: FolC Location: 26987-28223 bp Feature: domain Description: FolC Location: 26987-28223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HemolysinCabind (pfam00353), RVT-UG26, AmyAc_arch_bac_AmyA (cd11313), AmyA (COG0366), FolC (COG0285)